| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,662,303 – 5,662,415 |
| Length | 112 |
| Max. P | 0.773374 |
| Location | 5,662,303 – 5,662,415 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.66 |
| Mean single sequence MFE | -30.03 |
| Consensus MFE | -19.19 |
| Energy contribution | -21.20 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5662303 112 + 22224390 CAUGGGCUCGAACAGAGGGAGUCGUAUACAGAGAGAAAAAAAAUGGAGAUGGAUGCUUCUACAAAAC--------AAUUCAUCGUUGGUCAUCUUCUGUGAAAAAACAUACAUGUAUUCA (((((((((.........)))))...((((((((((..((..(((((..((..((......))...)--------).)))))..))..)).)).))))))..........))))...... ( -21.10) >DroSec_CAF1 1958 115 + 1 CAUGGGCUUGAACAGAGGGAGUCGUAAACAGCGAGAAAAAAUAUGGUGCU-UAUGCUCCUACAAAACAUUAUGCCAACUCAUCGUUGGUCACCUUCUGUAAAAAUCCAUGUAUAUA---- (((((..((..((((((((..((((.....))))..........((.((.-...)).)).............((((((.....))))))..))))))))..))..)))))......---- ( -34.50) >DroSim_CAF1 1974 115 + 1 CAUGGGCUUGAACAGAGGGAGUCGUAUACAGCGAGAAAAAAUAUGGUGCU-UAUGCUCCUACAAAACAUUAUGCCAACUCAUCGUUGGUCACCUUCUGUAAAAAUCCAUGUAUAUA---- (((((..((..((((((((..((((.....))))..........((.((.-...)).)).............((((((.....))))))..))))))))..))..)))))......---- ( -34.50) >consensus CAUGGGCUUGAACAGAGGGAGUCGUAUACAGCGAGAAAAAAUAUGGUGCU_UAUGCUCCUACAAAACAUUAUGCCAACUCAUCGUUGGUCACCUUCUGUAAAAAUCCAUGUAUAUA____ (((((..((..((((((((..((((.....))))..........((.((.....)).)).............((((((.....))))))..))))))))..))..))))).......... (-19.19 = -21.20 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:20 2006