Locus 2061

Sequence ID X_DroMel_CAF1
Location 5,661,037 – 5,661,157
Length 120
Max. P 0.536526
window3352

overview

Window 2

Location 5,661,037 – 5,661,157
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.21
Mean single sequence MFE -36.83
Consensus MFE -33.83
Energy contribution -34.49
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.92
SVM decision value 0.01
SVM RNA-class probability 0.536526
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5661037 120 - 22224390
GAUCCACUUUGGAGAGCUUGGAAUCCAACAUGCCAUCCAAGCACCAUCUGAUUGCAGAAAGCCCCCAAUCUUGGCCAGCUGACGAUCAGUUGUAUGUGAAGUCUCCACGUGUUUGGGAAU
..(((((..(((((((((((((.............)))))))..((.((((((((((...(((.........)))...))).))))))).)).........))))))...))...))).. ( -36.72)
>DroSec_CAF1 685 119 - 1
GAUCCACUUUGGAGAGCUUGGAAUCCAACAUGCCACCCAAGCAACAUCUGAUUGCAGAAAGCCCGCAAUCUUGGCCAGCUGACGAUCAGUUGUAUGUGAAGUCUCCACGUGUUUG-GAAU
..((((...((((((((((((...............)))))).(((.((((((((((...(((.........)))...))).))))))).)))........))))))......))-)).. ( -37.76)
>DroSim_CAF1 685 119 - 1
GAUCCACUUUGGUGAGCUUGGAAUCCAACAUGCCACCCAAGCAACAUCUGAUUGCAGAAAGCCCGCAAUCUUGGCCAGCUGACGAUCAGUUGUAUGUGAAGUCUCCACGUGUUUG-GAAU
..(((((((.((((.((.((........)).)))))).)))..(((.((((((((((...(((.........)))...))).))))))).)))(((((.......)))))...))-)).. ( -36.00)
>consensus
GAUCCACUUUGGAGAGCUUGGAAUCCAACAUGCCACCCAAGCAACAUCUGAUUGCAGAAAGCCCGCAAUCUUGGCCAGCUGACGAUCAGUUGUAUGUGAAGUCUCCACGUGUUUG_GAAU
....(((..((((((((((((...............)))))).(((.((((((((((...(((.........)))...))).))))))).)))........)))))).)))......... (-33.83 = -34.49 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:18 2006