Locus 2055

Sequence ID X_DroMel_CAF1
Location 5,646,193 – 5,646,287
Length 94
Max. P 0.988605
window3342

overview

Window 2

Location 5,646,193 – 5,646,287
Length 94
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 85.74
Mean single sequence MFE -39.08
Consensus MFE -29.04
Energy contribution -29.32
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -3.00
Structure conservation index 0.74
SVM decision value 2.13
SVM RNA-class probability 0.988605
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5646193 94 - 22224390
GGUCGU-UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUGGCAAAUUGGACGGGAAACGUCGCUGGGAAUGGGCUGGUAAC-------AGCCAGCUGGCAA----
......-...((((((......((((((.(((((.(((((....))))).)).(....).)))..))).)))(((((....)-------)))).))))))..---- ( -36.50)
>DroSec_CAF1 35700 94 - 1
GGUCGU-UCGGUCAGCAGAAUGCAUUCCUCGAGUGCAGUUGGCAAAUUGCACGGGAAACGUCGCUGGGAAUGGGCUGGUAAC-------AGCCAGCUGGCAA----
......-...((((((......((((((((((((((((((....)))))))).(....).)))..)))))))(((((....)-------)))).))))))..---- ( -42.70)
>DroSim_CAF1 34776 94 - 1
GGUCGU-UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUGGCAAAUUGCACGGGAAACGUCGCUGGGAAUGGGCUGGUAAC-------AGCCAGCUGGCAA----
......-...((((((......((((((.(((((((((((....)))))))).(....).)))..))).)))(((((....)-------)))).))))))..---- ( -41.00)
>DroEre_CAF1 35788 88 - 1
-------UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUGGCAAAUUGCACGGGAAACGUCGCCGGGAAUGGGUUGCUAAC-------AGCCAGCUGGCAA----
-------...((((((......((((((.(((((((((((....)))))))).(....).)))..))).)))(((((....)-------)))).))))))..---- ( -36.60)
>DroPer_CAF1 88861 100 - 1
------GUUGGUCAGCAAAAUGCAUCCCUGGAGUGCAGUUGGCAAAUUGCACGGAAAACGUCGCUGGGAAUGAGCUGGCGACUGGAAGCUGCAAGCUGGCAACUGG
------((((.(((((.....((.(((.....((((((((....)))))))).......(((((..(.......)..))))).))).)).....)))))))))... ( -38.60)
>consensus
GGUCGU_UCGGUCAGCAGAAUGCAUCCCUCGAGUGCAGUUGGCAAAUUGCACGGGAAACGUCGCUGGGAAUGGGCUGGUAAC_______AGCCAGCUGGCAA____
..........((((((......((((((.(((((((((((....)))))))).(....).)))..))).)))(((...............))).))))))...... (-29.04 = -29.32 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:09 2006