Locus 2054

Sequence ID X_DroMel_CAF1
Location 5,636,021 – 5,636,111
Length 90
Max. P 0.696350
window3341

overview

Window 1

Location 5,636,021 – 5,636,111
Length 90
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 75.44
Mean single sequence MFE -25.40
Consensus MFE -15.45
Energy contribution -15.95
Covariance contribution 0.50
Combinations/Pair 1.24
Mean z-score -1.74
Structure conservation index 0.61
SVM decision value 0.34
SVM RNA-class probability 0.696350
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5636021 90 + 22224390
AUAACGCAGAGAAUCAUCAGCGUGA------AGGAAUGAUUCUCUGCGGGCUGGAACCAGAAGUCCUGCAAAUGUUCUUUUACGGAUUUUAA----CCAG
....(((((((((((((...(....------..).)))))))))))))..((((.....(((((((.(.(((......))).))))))))..----)))) ( -28.40)
>DroSec_CAF1 25747 96 + 1
AUAACUCAGAGAAUCUUCAUGAUUUCUUAAUCAUAAUGAUUUCCUGCGGGCUGCAACCAGAAGUCCUGCAGAUGCUCUUUUACGGAUUUUAA----CCAG
.......((((((((...((((((....))))))...))))..(((((((((.........)).)))))))...)))).....((.......----)).. ( -21.40)
>DroSim_CAF1 25801 90 + 1
AUACUGCAGAGAAUCUUCAGCGUGC------AGUAAUGAUAUCCUGCGGGCUGCAACCAGAAGUCCUGCAGAUGCUCUUUUACGGAUUUUAA----CCAG
...((((((.((.(((.((((.(((------((..........))))).)))).....)))..))))))))............((.......----)).. ( -24.60)
>DroEre_CAF1 25720 94 + 1
AUAACGCACGGAAUCUGAAUCGUGA------AUGAAUGAUUCCUUGCGGACUGGAACCAGAAGUCCUGCAGAGGCUUCUUGAAUGAUUUGAAGUUUCGGA
.....(((.((((((....(((...------.)))..)))))).)))(((((.........)))))....((((((((...........))))))))... ( -27.20)
>consensus
AUAACGCAGAGAAUCUUCAGCGUGA______AGGAAUGAUUCCCUGCGGGCUGCAACCAGAAGUCCUGCAGAUGCUCUUUUACGGAUUUUAA____CCAG
.....((((((((((......................))))))))))(((((.........))))).((....))......................... (-15.45 = -15.95 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:08 2006