Locus 2053

Sequence ID X_DroMel_CAF1
Location 5,633,694 – 5,633,795
Length 101
Max. P 0.572332
window3340

overview

Window 0

Location 5,633,694 – 5,633,795
Length 101
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 84.27
Mean single sequence MFE -32.10
Consensus MFE -21.50
Energy contribution -22.26
Covariance contribution 0.76
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.67
SVM decision value 0.08
SVM RNA-class probability 0.572332
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5633694 101 + 22224390
AAAAGCAGGGGUUGG---UAGCAAAGGGUCCGAGCACUUGCUGCCAGGUUGGAUAGCGUCUCC-GAAAGAUCAAACUCUAACUG-ACGCACCUGCGAUUUUCUCAA
....(((((..((((---((((((...((....))..))))))))))........(((((...-...(((......)))....)-)))).)))))........... ( -31.90)
>DroSec_CAF1 23438 101 + 1
AAAAGCAGGGGUUGG---UAGCAAAGGAUCCGAGCACUUGCUGCCAGGUUGGAUUGCGUCUAG-AAAAGAUGAAACUCUAACUG-ACGCACCUGCGACUUUCUCAA
....(((((((((((---((((((..(.......)..)))))))).(((((((...(((((..-...)))))....))))))))-)).).)))))........... ( -33.70)
>DroSim_CAF1 23272 101 + 1
AAAAGCAGGGGUUGG---UAGCAAAGGGUCCGAGCACGUGCUGCCAGGUUGGAUUGCGUCUAA-AAAAGAUGAAACUCUAACUG-ACGCACCUGCGAUUUUCUCAA
....(((((((((((---(((((....((....))...))))))).(((((((...(((((..-...)))))....))))))))-)).).)))))........... ( -34.20)
>DroEre_CAF1 23481 87 + 1
AGGAGCAGGGCUUGG----------------GAGCACUUGCUGCCAGGUUGGAUUGCGUCUAC--AAAAAUGGAACUCUAACUG-ACGCGCCUGCGAUUUUCCCAA
.((((((((((((((----------------.(((....))).))))))......(((((...--..................)-)))).))))).....)))... ( -30.10)
>DroYak_CAF1 23318 106 + 1
AAAAACAGGGCUUGGUGGUAGCAAAGGGUCCGAGCACUUGCUGCCAGGUUGGAUUGCGUUCGCUAAGAAAUGGAACUCUAACUGGACGCACCUGCGAUUUUCUCAA
.....((((((....(((((((((...((....))..)))))))))(((((((((.(((((.....).)))).)).)))))))....)).))))............ ( -30.60)
>consensus
AAAAGCAGGGGUUGG___UAGCAAAGGGUCCGAGCACUUGCUGCCAGGUUGGAUUGCGUCUAC_AAAAGAUGAAACUCUAACUG_ACGCACCUGCGAUUUUCUCAA
....(((((.......................(((....)))((..(((((((((.(((((......))))).)).)))))))....)).)))))........... (-21.50 = -22.26 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:07 2006