| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,628,235 – 5,628,340 |
| Length | 105 |
| Max. P | 0.853709 |
| Location | 5,628,235 – 5,628,340 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.69 |
| Mean single sequence MFE | -31.98 |
| Consensus MFE | -16.94 |
| Energy contribution | -17.76 |
| Covariance contribution | 0.82 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5628235 105 - 22224390 UCACGCCAAAACAUUAGCGCAUC-CAUUAGAUUCAUUAUCAGUCGGGUGCCAAAUGGCAAAGUAAAUCGAGUGGCGGCACUUGUCAAUCG----------GUCGAUUGAUCAAGAA ...(((((...((((.(.(((((-((((.(((.....)))))).))))))).)))).....(.....)...)))))...((((((((((.----------...)))))).)))).. ( -30.40) >DroSec_CAF1 17818 114 - 1 UCACGCCAAAGCAUUAGCGCAUC-CAUUAGAUUCAUUAUCAGUUGGAUGC-AAAUGGCAAAGCAAAUCGAGUGGCGGCACUUGCCAAUCGGCCGAUGUCGGUCGAUUGAUCAAGAA ....((((..((....))(((((-((...(((.....)))...)))))))-...)))).........((((((....)))))).((((((((((....))))))))))........ ( -43.00) >DroSim_CAF1 18193 115 - 1 UCACGCCAAAGCAUUAGCGCAUC-CAUUAGAUUCAUUAUCAGUUGGAUGCCAAAUGGCAAAGCAAAUCGAGUGGCGGCACUUGCCAAUCGGUCGAUGUCGGUCGAUUGAUCAAGAA ...(((((..((....))(((((-((...(((.....)))...)))))(((....)))...))........)))))...((((.((((((..((....))..))))))..)))).. ( -39.90) >DroEre_CAF1 18038 113 - 1 UCACGCCGAAACAUUAACGCGUUGGAUUAGAUUCAUUAUCGGUCGGGUGCCAAAUGGUUGGGCAAAAUUAG---AGGCACUCGCCAAUAGGCAGCCGUCGGUCGAUUGAUCAAGAA .....((((..(......)..))))....((((....((((..((((((((...(((((......))))).---.)))))))(((....))).......)..)))).))))..... ( -32.00) >DroYak_CAF1 17807 88 - 1 UCACGCCACAACAUUAACGCAUC-UAUUAGAUUCAUUAUCAGUCGGUUGCCAAAUGGUAAAGCAAAUCGAG---AGGCACUUGCCC------------------------UAAGCA ....((............((...-.....(((.....)))......(((((....))))).))......((---.(((....))))------------------------)..)). ( -14.60) >consensus UCACGCCAAAACAUUAGCGCAUC_CAUUAGAUUCAUUAUCAGUCGGAUGCCAAAUGGCAAAGCAAAUCGAGUGGCGGCACUUGCCAAUCGG__G__GUCGGUCGAUUGAUCAAGAA ....(((....((((...(((((..(((.(((.....))))))..)))))..))))((...))............))).((((.((((((((((....))))))))))..)))).. (-16.94 = -17.76 + 0.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:05 2006