Locus 205

Sequence ID X_DroMel_CAF1
Location 729,028 – 729,125
Length 97
Max. P 0.727576
window313

overview

Window 3

Location 729,028 – 729,125
Length 97
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -29.16
Consensus MFE -17.21
Energy contribution -17.40
Covariance contribution 0.19
Combinations/Pair 1.12
Mean z-score -2.23
Structure conservation index 0.59
SVM decision value 0.42
SVM RNA-class probability 0.727576
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 729028 97 - 22224390
AAAUGCUCCCUUGUCAUCAAGUCUGUGCAAAGAA------------------CCAGGAGCUUCAGCUCCGGUUUAUGCACACGAAGAAAAACUCGGCUAAAGUCUGCUGUAGCUU
.........((((....))))((((((((..(((------------------((.(((((....)))))))))).)))))).))..........(((((.((....)).))))). ( -30.50)
>DroSec_CAF1 44995 97 - 1
AAAUGCUCCCUCGGCAUCAAGUCUGUGCAAAGAA------------------CCAGGAGCUUCAGCUCCGGUUUAUGCACACAAAGAAAAACUCGGCUAAAGUCUGCUGUAGCUU
....(((....(((((.......((((((..(((------------------((.(((((....)))))))))).)))))).............(((....)))))))).))).. ( -31.30)
>DroEre_CAF1 49973 95 - 1
AAAUGCUCCCUCGGCAUCAAGUCUGUGCAAAGCA------------------CCAGGAGCCUCAGCUCCGGUUUAUGCACACGAAGAAAAACCCACCUAAA--CUGCUGUAGCUU
....(((....(((((((...((((((((.((.(------------------((.(((((....)))))))))).)))))).)).))..............--.))))).))).. ( -25.86)
>DroYak_CAF1 46536 113 - 1
AAAUGCUCCCUCGGCAGCAAGUCUGUGCAAAGAACGAGAACCAGAACCAGGACCUGGAGCCUCAGUUCCUGUUUAUGCACACGAAGAAAAACUCACCUAAA--CUGCUGUGGCUC
........((.((((((....((((((((..(((((.((((..(..((((...))))..)....)))).))))).)))))).)).((.....)).......--)))))).))... ( -29.00)
>consensus
AAAUGCUCCCUCGGCAUCAAGUCUGUGCAAAGAA__________________CCAGGAGCCUCAGCUCCGGUUUAUGCACACGAAGAAAAACUCACCUAAA__CUGCUGUAGCUU
....(((....(((((.......((((((.(((......................(((((....)))))..))).))))))....((.....))..........))))).))).. (-17.21 = -17.40 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:57 2006