Locus 2048

Sequence ID X_DroMel_CAF1
Location 5,624,912 – 5,625,011
Length 99
Max. P 0.931140
window3333

overview

Window 3

Location 5,624,912 – 5,625,011
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 77.64
Mean single sequence MFE -35.30
Consensus MFE -20.66
Energy contribution -22.47
Covariance contribution 1.81
Combinations/Pair 1.30
Mean z-score -2.15
Structure conservation index 0.59
SVM decision value 1.21
SVM RNA-class probability 0.931140
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5624912 99 + 22224390
GAAUUUCAUCUUGGACUUUAGAUGGGAUUUCAGCAGGAACUUCUGCUGGGGUUUCAGCUGGGGUUUCCGCUGGAGCUUCAGCUACAACUUGAGCUGGAA
((((..(((((........)))))..))))((((.((((((((....))))))))((((((((((((....)))))))))))).........))))... ( -39.30)
>DroSec_CAF1 14619 99 + 1
GGAUUUCAUCUUGGACUUUAGAUGGGACUUCAGCAGGAACUUCUGCUGGUGUAUAAACUGGGGUUUCCGCUGGAGCUUCAUCUACAACUUGAGCUGGAA
...(((((.((..(....(((((((..(((((((.((((((....(..((......))..))))))).)))))))..)))))))....)..)).))))) ( -34.30)
>DroSim_CAF1 14969 99 + 1
GGAUUUCAUCUUGGACUUUAGCUGGGACUUCAGCAGGAACUUCUGCUGGGGUUUCAACUGGGGUUUCCGCUGGAGCUUCAUCUACAACUUGAACUGGAA
....((((..(((((((((((.((..(((((((((((....)))))))))))..)).)))))))).....((((......)))))))..))))...... ( -34.20)
>DroEre_CAF1 14611 99 + 1
GGAUUUCAUCUUCGAUUUUGGAUGGGAUGUCAGCAGGAACUUCUGCAGGGACUUCAGCUGGGGCUUCCGCUGGAACAUCGGCUUGAACUUGAGCUGGAA
..((..(((((........)))))..))(((.(((((....)))))...)))(((((((.(((.(((.((((......))))..)))))).))))))). ( -34.20)
>DroYak_CAF1 14382 99 + 1
GGAUUUCAUCUUGUUGCUUAGAUGGGAUUUCAGCUGGUACUUCUGCAGUGUUUUCAGCUGUGGUUUCCGCUGGAACUUCAGCGAGAACCUGAACUGGAA
((((..(((((........)))))..))))(((((((((((.....))))...))))))).((((..((((((....))))))..)))).......... ( -33.30)
>DroAna_CAF1 13888 99 + 1
GAACUUCCACUGGGGCUUCAGGGGCGAUGGCAGCUGGGAUUUCGGCGGGAGCUUCAGCUGGGGUUUGUGGCACGGCUUCAGUGGGAAUCUCAACUGGAG
....(((((((((((((((((..((....))..))))......(.((.(((((((....))))))).)).)..)))))))))))))..(((.....))) ( -36.50)
>consensus
GGAUUUCAUCUUGGACUUUAGAUGGGAUUUCAGCAGGAACUUCUGCUGGGGUUUCAGCUGGGGUUUCCGCUGGAGCUUCAGCUACAACUUGAACUGGAA
...((((((((........))))))))(((((((.(((((..(.((..........)).)..))))).))))))).(((((((........))))))). (-20.66 = -22.47 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:01 2006