Locus 2047

Sequence ID X_DroMel_CAF1
Location 5,619,971 – 5,620,087
Length 116
Max. P 0.519371
window3332

overview

Window 2

Location 5,619,971 – 5,620,087
Length 116
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 82.36
Mean single sequence MFE -50.98
Consensus MFE -31.40
Energy contribution -31.90
Covariance contribution 0.50
Combinations/Pair 1.27
Mean z-score -1.85
Structure conservation index 0.62
SVM decision value -0.03
SVM RNA-class probability 0.519371
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5619971 116 + 22224390
CUGCAAGCCCUCCAGCGUGGACUCGUACAGUUCGCUGCUAUUGAGGGUAAGCAGGGCGAGCGGCAGACCGGAGAUUCCGGAGAUUUCCGGCACGGAGACGCUGCGCCAGAGCAGCA
((((..((((((.((((((((((.....))))))).)))...))))))..))))(((..(((((.(.(((((((((.....))))))))))..(....)))))))))......... ( -53.60)
>DroPse_CAF1 49986 116 + 1
CUGCAGACUUUCGAAUGUGGUCUCGUACAGAUCGCUGCCAUUGAGAGACCACAAGGCCAGCGGCAGUUCGGACAGCCCCGAGAGAUCCGGCACGGAGACACUCCGCCAAAGCACCA
.(((.(((((((((((((((((((...(((....))).......))))))))...(((...))).))))((......))))))).)).(((..((((...)))))))...)))... ( -38.10)
>DroSim_CAF1 10371 116 + 1
CUGCAGGCCCUCCAGCGUGGACUCGUACAGCUCGCUGCCAUUGAGGGUCAGCAGGGCGAGGGGCAGACCGGAGAUUCCGGAGAUCUCCGGCACGGAGACGCUGCGCCAGAGCAGCA
((((.((((((((((((.((.((.....))))))))).....))))))).)))).((..((.((((.(((((((((.....)))))))))..((....)))))).))...)).... ( -55.00)
>DroYak_CAF1 9697 116 + 1
CUGCAAACCCUCCAGCGUGGACUCGUACAGCUCGCUGCUAUUGAGGGUCAGCAGGGCGAGGGGCAGGCCGGAGAUUCCGGAGAUCUCCGGCACGGAGACGCUGCGCCACAGCAGCA
((((..((((((.((((((..((.....))..))).)))...))))))..)))).((..((.((((((((((((((.....)))))))))).((....)))))).))...)).... ( -57.80)
>DroAna_CAF1 9934 116 + 1
CUGCAGGCCCUCGAAGGUGGCGGCGUAGAGCUCGCUGCCGUUGAGGGUCAGCAGGGCGAGGGGCAGGCCGGAGAGGCCGCUCAGCUCCGGCACGGAGACGCUCCGCCAAAGCAGCA
((((.(((((((((.((..(((((.....)).)))..)).))))))))).((.(((((..((((.((((.....))))))))..(((((...))))).))))).))....)))).. ( -67.00)
>DroPer_CAF1 56878 116 + 1
CUGCAGACUUUCGAAUGUGGUCUCGUACAGAUCGCUGCCAUUGAGUGACCACAAGGCCAGCGGCAGUUCGGACAGCCCCGAGAGAUCCGACACGGAGACACUCCGCCAAAGCACCA
.(((.((((((((...((.(((.((.((.(.((((((((.(((........))))).))))))).)).))))).))..)))))).)).....(((((...))))).....)))... ( -34.40)
>consensus
CUGCAGACCCUCCAACGUGGACUCGUACAGCUCGCUGCCAUUGAGGGUCAGCAGGGCGAGCGGCAGACCGGAGAGUCCGGAGAGCUCCGGCACGGAGACGCUCCGCCAAAGCAGCA
((((.(((((((....((((...((.......))...)))).))))))).)))).((....(((.(.((((((...........)))))))..(....).....)))...)).... (-31.40 = -31.90 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:00 2006