Locus 2046

Sequence ID X_DroMel_CAF1
Location 5,618,932 – 5,619,052
Length 120
Max. P 0.862039
window3331

overview

Window 1

Location 5,618,932 – 5,619,052
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.94
Mean single sequence MFE -37.40
Consensus MFE -26.39
Energy contribution -25.95
Covariance contribution -0.44
Combinations/Pair 1.26
Mean z-score -1.18
Structure conservation index 0.71
SVM decision value 0.83
SVM RNA-class probability 0.862039
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5618932 120 - 22224390
CAAAGGGCAAGGACAAGGGUGAAGGUCAGAGGCAGAGCAGAGCGGAGAAGGCGAUGCGCCGCAUCGAUUGGUACUUCCUGCCAUUGGCAAAUCCAGAUGGCUACCAGUACUCCCGCCAGA
.....(((..(((...((((....(((((.(((((.(.((.((.((.....((((((...)))))).)).)).)).)))))).)))))..))))...(((...)))....))).)))... ( -38.10)
>DroVir_CAF1 13556 90 - 1
------------------------------AGCAGGGUGAGGCGGAUAAAGCAAUGCGUCACAUCGAUUGGUACUUUCUGCCAUUGGCUAAUCCCGAUGGCUAUCAGUACUCUCGACUCA
------------------------------......((((.(((..........))).)))).((((..((((((....((((((((......))))))))....)))))).)))).... ( -31.20)
>DroPse_CAF1 48891 90 - 1
------------------------------AGCACGGCAAGCUGGAGAAGUUGAUGCGCCGCAUCGACUGGUACUUCCUGCCGCUGGCCAAUCCCGACGGCUACCAGUACUCCCGGCAGA
------------------------------..........(((((.(((((((((((...))))))))).(((((....((((.(((......))).))))....))))))))))))... ( -35.30)
>DroEre_CAF1 8615 108 - 1
------------CCCAGGAUGAGGGUCAGAGGCAGGGCAGGGCGGAGAAGGCGAUGCGCCGCAUCGAUUGGUACUUCCUGCCGCUGGCAAAUCCAGAUGGCUACCAGUACUCCCGCCACA
------------....((((....(((((.(((((((.((..(.((.....((((((...)))))).)).)..))))))))).)))))..))))...((((.............)))).. ( -41.92)
>DroYak_CAF1 8698 108 - 1
------------CGAAGGGUGGGGGUCAGAGGCAGAGCAGGGCGGAGAGGGCGAUGCGCCGCAUCGAUUGGUACUUCCUGCCACUGGCAAAUCCCGAUGGCUACCAGUACUCCCGCCACA
------------.....(((((((((....(((((.(.((..(.((.....((((((...)))))).)).)..)).))))))(((((.....((....))...))))))))))))))... ( -42.60)
>DroPer_CAF1 55767 90 - 1
------------------------------AGCACGGCAAGCUGGAGAAGUUGAUGCGUCGCAUCGACUGGUACUUCCUGCCGCUGGCCAAUCCCGACGGCUACCAGUACUCCCGGCAGA
------------------------------..........(((((.(((((((((((...))))))))).(((((....((((.(((......))).))))....))))))))))))... ( -35.30)
>consensus
______________________________AGCAGGGCAAGGCGGAGAAGGCGAUGCGCCGCAUCGAUUGGUACUUCCUGCCACUGGCAAAUCCCGAUGGCUACCAGUACUCCCGCCACA
........................................(((((((....((((((...))))))(((((((......((((.(((......))).))))))))))).))).))))... (-26.39 = -25.95 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:59 2006