Locus 2041

Sequence ID X_DroMel_CAF1
Location 5,608,534 – 5,608,645
Length 111
Max. P 0.656361
window3321

overview

Window 1

Location 5,608,534 – 5,608,645
Length 111
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 92.48
Mean single sequence MFE -28.42
Consensus MFE -24.34
Energy contribution -24.18
Covariance contribution -0.16
Combinations/Pair 1.09
Mean z-score -1.31
Structure conservation index 0.86
SVM decision value 0.26
SVM RNA-class probability 0.656361
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5608534 111 - 22224390
U-UUUUCUGCCUCUCUGUAAGUUCAUUUGCAUGCAAUUUGAA-----UCGAGCCGAGAUCGCAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAUAUCUAUAAGGCUGGAGAAC
(-(((((.(((((((.((..(((((.(((....)))..))))-----)...)).))))..((((......((((((....))))))......))))..........))).)))))). ( -27.40)
>DroSec_CAF1 10214 111 - 1
U-UUUUCUGCCUUUCUGUAAGUUCAUUUGCAUGCAAUUUGAA-----UCGAGCCGAGAUCGCAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAUAUCUAUAAGGCUGGAGAAC
.-..((((.((.........(((((.(((....)))..))))-----)..((((.((((.((((......((((((....))))))......))))..))))....)))))))))). ( -26.20)
>DroSim_CAF1 11940 111 - 1
U-UUUUCUGCCUUUCUGUAAGUUCAUUUGCAUGCAAUUUGAA-----UCGAGCCGAGAUCGCAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAUAUCUAUAAGGCUGGAGAAC
.-..((((.((.........(((((.(((....)))..))))-----)..((((.((((.((((......((((((....))))))......))))..))))....)))))))))). ( -26.20)
>DroEre_CAF1 10649 112 - 1
U-UUCUCUGCCUUUGUGUAAGUUCAUUUGCAUGCAAUUUGAAUGUAGUCGAGUCGAGAUCGGAGCUCUUCGAUGUUCUCGGAUCUCCAUAUUCUGUAU----AUAAGGCUGGGGAAC
(-(((((.(((((.(((((.(((((.(((....)))..)))))......((((.((((((.(((..(......)..))).))))))...))))..)))----))))))).)))))). ( -34.30)
>DroYak_CAF1 10787 108 - 1
UUUUUUCUGCCUUUCUGUAAGUUCAUUUGCAUGCAAUUUGAA-----UCGAGUCGAGAUCGAAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAU----UUAAGGCUGGAGAAC
.((((((.(((((...(((.(((((.(((....)))..))))-----).((..((((((((((....)))))...)))))..))...........)))----..))))).)))))). ( -28.00)
>consensus
U_UUUUCUGCCUUUCUGUAAGUUCAUUUGCAUGCAAUUUGAA_____UCGAGCCGAGAUCGCAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAUAUCUAUAAGGCUGGAGAAC
..(((((((((((...(((((....)))))(((((..............((((((....))..))))...((((((....)))))).......)))))......))))).)))))). (-24.34 = -24.18 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:50 2006