Locus 204

Sequence ID X_DroMel_CAF1
Location 728,279 – 728,382
Length 103
Max. P 0.940686
window312

overview

Window 2

Location 728,279 – 728,382
Length 103
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 73.35
Mean single sequence MFE -35.96
Consensus MFE -17.96
Energy contribution -19.08
Covariance contribution 1.12
Combinations/Pair 1.18
Mean z-score -2.05
Structure conservation index 0.50
SVM decision value 1.31
SVM RNA-class probability 0.940686
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 728279 103 - 22224390
ACUGGGGAGUGUUUUAGGUG---GCAGGCCAGGCCGGGACGGGCCAAAAAGUGCUCCAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGGGGCGAAAG-CGC-----C----
.((.((((((((......((---(((((...((((......)))).........(((((((........))))))).))))))))))))))).))((....)-)..-----.---- ( -36.20)
>DroSec_CAF1 44271 103 - 1
ACUGGGGAGUGUUUUAGGUG---ACAGGCCAGGCCGGGACGGGCCAAAAAAUGCUCCAUAGAAAGCAUAUUGUGGAAUUUGUCAACAUUCCUGAGGCGAAAG-CGC-----C----
.((.((((((((......((---((((.(((((((......)))).....(((((........)))))....)))...)))))))))))))).))((....)-)..-----.---- ( -38.00)
>DroEre_CAF1 49251 105 - 1
ACUGGGGAGUGUUUUGGGCGGUGGCAGGCCAGGC-----CAGGCCAAAAAGUGCUCCAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGGGGCAAG-G-CGCCGCGCC----
...............((((((((.(.((((....-----..))))......(((((((......((.....))(((((........)))))))))))).)-.-)))))).))---- ( -36.10)
>DroYak_CAF1 45849 99 - 1
ACUGGGGAGUGUUUUGGGCGGUG----------C-----CACGCCAAAAAGUGCUUCAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGGGGCGAA-G-CGCCCCGCCCCGC
.(((.((((..((((.((((...----------.-----..))))..))))..)))).)))............(((((........))))).((((((..-.-.....)))))).. ( -34.70)
>DroAna_CAF1 56932 101 - 1
ACUGGGGAGUGGUCUCCCU-----CCGUCCGUAC--------CCUGAAAAGUGUGCUAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGAGGCCCAGACCAC--CCCCCCUC
...((((.(((((((.(((-----(.....((((--------.((....)).)))).................(((((........))))).))))...)))))))--.))))... ( -34.80)
>consensus
ACUGGGGAGUGUUUUAGGUG____CAGGCCAGGC_____CAGGCCAAAAAGUGCUCCAUAGAAAACAUAUUGUGGAAUUUGUCAACAUUCCUGGGGCGAA_G_CGC__C_CC____
.((.(((((((((.............((((...........)))).........(((((((........))))))).......))))))))).))..................... (-17.96 = -19.08 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:56 2006