Locus 2039

Sequence ID X_DroMel_CAF1
Location 5,602,169 – 5,602,266
Length 97
Max. P 0.655049
window3319

overview

Window 9

Location 5,602,169 – 5,602,266
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -15.77
Consensus MFE -12.85
Energy contribution -13.30
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -2.39
Structure conservation index 0.82
SVM decision value 0.25
SVM RNA-class probability 0.655049
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5602169 97 - 22224390
CAUUGAACACAUUUUCAAGAAUACCUAUUUAUACCUUUCUCUCUUGAAGGGAAAAUUCUAAAAACUUUAACCUUUUAAGAUCGCAAAUAGACUCAUU
..(((((......)))))......((((((...((((((......)))))).....(((.((((........)))).)))....))))))....... ( -13.20)
>DroSec_CAF1 3779 97 - 1
CAUGAAACACAUUUUCAAGAAUACCUAUUUGUACCUUUCUCUCUUGAAGGGAAAACGCUAAAAACUUUAACCUUUUAAGAUCGCAAAUAGACUCAAU
..(((((.....))))).......((((((((.((((((......)))))).............(((.........)))...))))))))....... ( -16.20)
>DroSim_CAF1 4310 97 - 1
CAUGAAACACAUUUUCAAGAAUACCUAUUUGUACCUUUCUCUCUUGAAGGGAAAUCGCUAAAAACUUUAACCUUUUAAGAUAGCAAAUAGACUCAAU
..(((((.....))))).......((((((((.((((((......))))))..(((..(((((.........))))).))).))))))))....... ( -17.90)
>consensus
CAUGAAACACAUUUUCAAGAAUACCUAUUUGUACCUUUCUCUCUUGAAGGGAAAACGCUAAAAACUUUAACCUUUUAAGAUCGCAAAUAGACUCAAU
..(((((.....))))).......((((((((.((((((......)))))).............(((.........)))...))))))))....... (-12.85 = -13.30 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:48 2006