Locus 2036

Sequence ID X_DroMel_CAF1
Location 5,593,084 – 5,593,187
Length 103
Max. P 0.764023
window3312

overview

Window 2

Location 5,593,084 – 5,593,187
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.18
Mean single sequence MFE -31.83
Consensus MFE -19.50
Energy contribution -19.58
Covariance contribution 0.09
Combinations/Pair 1.23
Mean z-score -1.78
Structure conservation index 0.61
SVM decision value 0.51
SVM RNA-class probability 0.764023
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5593084 103 + 22224390
AAAUAGUAUUAUUAAGAAUAAUGCCGGAGAGCCUGAUCGCCGGCAUUCCGGUGCACUUUCCGUUCGAGCCGUACCCGGUUCAACGGGCGUACAUGGAGAAGGU
.....................((((((.((......)).))))))(((((((((....((((((.((((((....)))))))))))).)))).)))))..... ( -36.60)
>DroVir_CAF1 1 83 + 1
--------------------AUGCCGGAGAAUAUUAUCGCCGGCAUUCCGGUGCAUUUUCCCUUUGAGCCAUACGAGGUGCAGCGCGCCUACAUGGAGAAGGU
--------------------(((((((.((......)).)))))))..............(((((...((((...((((((...))))))..)))).))))). ( -30.80)
>DroGri_CAF1 1 83 + 1
--------------------AUGCCGGAGAACAUAAUCGCCGGCAUACCGGUGCAUUUUCCCUUCGAGCCAUACGAUGUGCAGCGCGCUUAUAUGGAAAAGGU
--------------------(((((((.((......)).)))))))..............((((....(((((..(.((((...)))))..)))))..)))). ( -25.80)
>DroSec_CAF1 1 83 + 1
--------------------AUGCCGGAGAGCCUGAUCGCCGGCAUUCCGGUGCACUUCCCGUUCGAGCCGUAUCCGGUUCAACGGGCGUACAUGGAGAAGGU
--------------------.((((((.((......)).))))))(((((((((....((((((.((((((....)))))))))))).)))).)))))..... ( -39.10)
>DroEre_CAF1 1 83 + 1
--------------------AUGCCAGAGAGCCUAAUCGCCGGCAUUCCGGUGCACUUCCCGUUCGAACCAUAUCCGGUUCAGCGGGCGUACAUGGAGAAGGU
--------------------..(((.....(((........))).(((((((((....((((((.(((((......))))))))))).)))).)))))..))) ( -31.50)
>DroAna_CAF1 1 83 + 1
--------------------AUGCCGGAAAGUCUGAUCGCCGGUAUACCGGUGCACUUUCCCUUCGAGCCCUACCCGGUGCAGCGAGCGUACAUGGAGAAGGU
--------------------..((((((((((.....((((((....)))))).)))))))(((((.((((.....)).)).((....))...)))))..))) ( -27.20)
>consensus
____________________AUGCCGGAGAGCCUGAUCGCCGGCAUUCCGGUGCACUUUCCCUUCGAGCCAUACCCGGUGCAGCGGGCGUACAUGGAGAAGGU
......................(((((((((......((((((....))))))..)))))).(((...((((.((((......)))).....)))).)))))) (-19.50 = -19.58 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:42 2006