| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,592,937 – 5,593,055 |
| Length | 118 |
| Max. P | 0.661588 |
| Location | 5,592,937 – 5,593,055 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.20 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -18.44 |
| Energy contribution | -18.67 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5592937 118 + 22224390 CUCGGAGUUCAAGAUAACGCUAUAAAA--UUACUUAAUCAGGGUCCACUGUACUCUAUCGAUAGCGAUAACUGACCACCUACACAGACAUUUAUUGUUAUCGACCAACGAACACAUGUUC ...(((((...((...((.((......--..........)).))...))..))))).((((((((((((((((..........)))....))))))))))))).....((((....)))) ( -21.79) >DroSim_CAF1 1366 118 + 1 CUUCGAGUUAAAGAUAACCCUAUAAAA--UUUCUUAAUCAGUGUCCACUGUACCUUAUCGAUAGCGAUAACUGACUACCCACACAGACAAUUGUUGUUAUCGACCAACGAACACAUGUUC ......(((..................--.........((((....)))).......(((((((((((((.((.((........)).)).)))))))))))))..)))((((....)))) ( -21.00) >DroYak_CAF1 1818 119 + 1 CUCGGAGUUCAAGAUGACCUAAUAAAAUAUUAUUUAAUCAGAGUCCACCGUACUCUAUCGAUAGCGAUAACUGUUCACC-ACACAUACAGGUAUCGUUAUCGAGCAACGAACACAUGUUC .(((..((((..(((((...(((((....)))))...))(((((.......))))))))((((((((((.((((.....-......)))).))))))))))))))..))).......... ( -29.90) >consensus CUCGGAGUUCAAGAUAACCCUAUAAAA__UUACUUAAUCAGAGUCCACUGUACUCUAUCGAUAGCGAUAACUGACCACC_ACACAGACAAUUAUUGUUAUCGACCAACGAACACAUGUUC ......((((.............................(((((.......))))).(((((((((((((.((..............)).))))))))))))).....))))........ (-18.44 = -18.67 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:41 2006