| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,592,088 – 5,592,208 |
| Length | 120 |
| Max. P | 0.599795 |
| Location | 5,592,088 – 5,592,208 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.33 |
| Mean single sequence MFE | -41.72 |
| Consensus MFE | -38.08 |
| Energy contribution | -38.19 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5592088 120 - 22224390 UAUGCACCUCGGCGGCAGAGCGAAAGAGAGCGCACUCUGGCUGUGUGUGUGCGUGUGUGUUCUCGCUCUCUCGCGCGGUGGUGAUAAAUUUCUGUUGGCACAAAGUAAAAAUAUAACAGA ....(((((((((((.(((((....((((((((((.(..((.......))..).))))))))))))))).)))).))).)))).......(((((((................))))))) ( -41.99) >DroSim_CAF1 510 120 - 1 UAUGCACCUCGGCGGCAGAGCGAAAGAGAGCGCACUCUGGCUGUGUGUGUGCGUGUAUGUUCUCGCUCUCUCGCGCGGUGGUGAUAAAUUUCUGUUGGCACAAAGUAAAAAUAUAACAGA ....(((((((((((.(((((((((.(..((((((.(.........).))))))...).)).))))))).)))).))).)))).......(((((((................))))))) ( -40.69) >DroYak_CAF1 504 120 - 1 UAUGCACCACGGCGGCAGAGCGAAAGAGAGCGCACUCUGGCUGUGUGUGUGCGUGUGUGUUCUCGCUCUCUCGUGCGGUGGUGAUAAAUUUCUGUUGGCACAAAGUAAAAAUAUAACAGA ....((((((.(((...(((.((..((((((((((.(..((.......))..).))))))))))..)).))).))).)))))).......(((((((................))))))) ( -42.49) >consensus UAUGCACCUCGGCGGCAGAGCGAAAGAGAGCGCACUCUGGCUGUGUGUGUGCGUGUGUGUUCUCGCUCUCUCGCGCGGUGGUGAUAAAUUUCUGUUGGCACAAAGUAAAAAUAUAACAGA ....(((((((((((.(((((((..(((.((((((.(.........).)))))).....)))))))))).)))).))).)))).......(((((((................))))))) (-38.08 = -38.19 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:40 2006