Locus 2033

Sequence ID X_DroMel_CAF1
Location 5,591,815 – 5,591,933
Length 118
Max. P 0.956716
window3309

overview

Window 9

Location 5,591,815 – 5,591,933
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.17
Mean single sequence MFE -21.97
Consensus MFE -15.02
Energy contribution -16.47
Covariance contribution 1.45
Combinations/Pair 1.07
Mean z-score -2.20
Structure conservation index 0.68
SVM decision value 1.47
SVM RNA-class probability 0.956716
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5591815 118 + 22224390
AAAUGUGUGGACAUAUUUUAAAAGUGCGAUUCUAAGGAUCGCAUGGUUAAUAUUUUAGAUCUAAAUUUUCUAUCUCAAAAAAA--AAAAAAAUGGUACAACAUUCAUACACAACUACACC
....((((((.......((((..((((((((.....))))))))..)))).....((((.........))))...........--.....((((......)))).........)))))). ( -21.90)
>DroSim_CAF1 241 120 + 1
AAAUGUGUGGUCGUAUGUAAAAAGUGCGAUUCUAAGGAUCGUAUGGUUAAUAUUUUAGUUUUAUAUUUUCUCUCUCAAAAAAAAAAAAAAAAUGGCACAACAUUCAUACACAACUACACC
....(((((((.((((((((...((((((((.....))))))))..))).........................................((((......)))))))))...))))))). ( -22.40)
>DroYak_CAF1 241 105 + 1
AAAUGUGUGGUCGUGUCUUAAAAUUUCGAUUAUAAGGAUCGCAUAGUUAAUACUUUAAAU-------UUCUCU--------AAGAAAAAAAAUGGGACAACACUCACACAUAACUACACC
..(((((((((..(((((((.((((.(((((.....)))))...))))...........(-------(((...--------..)))).....)))))))..)).)))))))......... ( -21.60)
>consensus
AAAUGUGUGGUCGUAUCUUAAAAGUGCGAUUCUAAGGAUCGCAUGGUUAAUAUUUUAGAU_UA_AUUUUCUCUCUCAAAAAAA_AAAAAAAAUGGCACAACAUUCAUACACAACUACACC
....(((((((.((((.((((..((((((((.....))))))))..))))........................................((((......)))).))))...))))))). (-15.02 = -16.47 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:39 2006