Locus 2029

Sequence ID X_DroMel_CAF1
Location 5,581,718 – 5,581,815
Length 97
Max. P 0.649669
window3303

overview

Window 3

Location 5,581,718 – 5,581,815
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 70.62
Mean single sequence MFE -27.00
Consensus MFE -16.07
Energy contribution -17.15
Covariance contribution 1.08
Combinations/Pair 1.15
Mean z-score -1.29
Structure conservation index 0.59
SVM decision value 0.24
SVM RNA-class probability 0.649669
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5581718 97 + 22224390
CUCCAGCAGAAAGAACGAC-CAAUAAAAAAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCUC-U---UCGUGGGGUUAACUUCGCUUACUUAACCCCUG------------------
...................-..........(((((((((((((........((....)).(((((-(---....)))))).)))))))))))))........------------------ ( -22.80)
>DroSec_CAF1 9827 95 + 1
CUCCGGCAGAAAGAACAAC-CAACAA--AAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCCC-U---UCGUGGGGUUAACUUCGCUUACUUAACCCCCG------------------
...(((......(......-).....--..(((((((((((((........((....)).(((((-(---....)))))).))))))))))))).....)))------------------ ( -25.90)
>DroSim_CAF1 9924 81 + 1
--------------ACAAC-CAACAA--AAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCCC-U---UCGUGGGGUUAACUUCGCUUACUUAACCCCCG------------------
--------------.....-......--..(((((((((((((........((....)).(((((-(---....)))))).)))))))))))))........------------------ ( -25.80)
>DroEre_CAF1 10258 80 + 1
--------------ACAA--CAGCAA--AAAAGUGGGCGGAGUCAGAGGUCGCACAUGCAAGCCC-U---UCGUGGGGUUAACAUCGCUUACUUAACCCCUG------------------
--------------....--(((...--..(((((((((..((........((....)).(((((-(---....)))))).))..))))))))).....)))------------------ ( -23.20)
>DroYak_CAF1 10258 79 + 1
--------------ACUC--C-AUAA--AAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCCC-U---UCGUGGGGUUAACUUCGCUUACUUAACCCCUG------------------
--------------....--.-....--..(((((((((((((........((....)).(((((-(---....)))))).)))))))))))))........------------------ ( -25.80)
>DroAna_CAF1 11192 117 + 1
CUCCACCCGCAUCCCCCACCCACCUA-ACCCAUGGGGCGGGGUCAAAGGUUGGUCAUGCAAUACCCCUAGCAGUGGGGUUAACUUU--CUACUUAACCCCCACCACUGCCAGCCAGCCUU
.....(((((....((((........-.....)))))))))....((((((((.............((.(((((((((((((....--....))))))))....))))).)))))))))) ( -38.53)
>consensus
______________ACAAC_CAACAA__AAAAGUGGGCGGGGUCAGAGGUCGCACAUGCAAGCCC_U___UCGUGGGGUUAACUUCGCUUACUUAACCCCCG__________________
..............................(((((((((((((........((....)).(((((..........))))).))))))))))))).......................... (-16.07 = -17.15 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:34 2006