| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,563,767 – 5,563,857 |
| Length | 90 |
| Max. P | 0.582420 |
| Location | 5,563,767 – 5,563,857 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 76.49 |
| Mean single sequence MFE | -14.70 |
| Consensus MFE | -9.57 |
| Energy contribution | -9.90 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5563767 90 + 22224390 CCCAACCCCCCCAUGGGCAAACUUCUCUCACCAAGUGCUCCGCAAAUUGAUAAUCUAACGGUGCGGAAUGCCACAACUAAUUCGCAAUAU .............((((((.((((........))))..((((((..(((......)))...)))))).)))).))............... ( -15.60) >DroSec_CAF1 10962 71 + 1 UCCAAC----------------UGCUCCCCC---UGGCUCCGCAAAUUGAUAAUCUCACGGUGCGGAAUGCCACAACUAAUUCGCAAUAU ......----------------(((......---((((((((((...(((.....)))...))))))..))))..........))).... ( -16.19) >DroSim_CAF1 3872 69 + 1 UCCAAC----------------UGCCCCCGC---UUGCUCCGCAAAUUGAUAAUCUCACGGUGCGGAAUGCC-CAACUAAUUCGCA-UAU ......----------------.........---....((((((...(((.....)))...))))))((((.-..........)))-).. ( -12.30) >consensus UCCAAC________________UGCUCCCAC___UUGCUCCGCAAAUUGAUAAUCUCACGGUGCGGAAUGCCACAACUAAUUCGCAAUAU ....................................((((((((...(((.....)))...))))))..))................... ( -9.57 = -9.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:30 2006