Locus 2024

Sequence ID X_DroMel_CAF1
Location 5,543,686 – 5,543,793
Length 107
Max. P 0.917163
window3295

overview

Window 5

Location 5,543,686 – 5,543,793
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 99.38
Mean single sequence MFE -33.78
Consensus MFE -32.88
Energy contribution -32.88
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.97
SVM decision value 1.11
SVM RNA-class probability 0.917163
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5543686 107 + 22224390
UUUGAAUAGCCAAUUUGGCAACACUGGCUCAGGUUCGACGUCGAGCCGGGCGGUUCGAACCGAUCGAGAGGAAAAUCUAUUUAAGCAACACACAACUCUCGACACUU
(((((((.(((.....))).......((((.((((((....)))))))))).)))))))..(.(((((((.........................)))))))).... ( -33.21)
>DroSec_CAF1 5603 107 + 1
UUUGAAUAGCCCAUUUGGCAACACUGGCUCAGGUUCGACGUCGAGCCGGGCGGUUCGAACCGAUCGAGAGGAAAAUCUAUUUAAGCAACACACAACUCUCGACACUU
(((((((.((((...((....))........((((((....)))))))))).)))))))..(.(((((((.........................)))))))).... ( -34.91)
>DroSim_CAF1 5656 107 + 1
UUUGAAUAGCCAAUUUGGCAACACUGGCUCAGGUUCGACGUCGAGCCGGGCGGUUCGAACCGAUCGAGAGGAAAAUCUAUUUAAGCAACACACAACUCUCGACACUU
(((((((.(((.....))).......((((.((((((....)))))))))).)))))))..(.(((((((.........................)))))))).... ( -33.21)
>consensus
UUUGAAUAGCCAAUUUGGCAACACUGGCUCAGGUUCGACGUCGAGCCGGGCGGUUCGAACCGAUCGAGAGGAAAAUCUAUUUAAGCAACACACAACUCUCGACACUU
(((((((.(((.....))).......((((.((((((....)))))))))).)))))))..(.(((((((.........................)))))))).... (-32.88 = -32.88 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:27 2006