Locus 202

Sequence ID X_DroMel_CAF1
Location 704,310 – 704,410
Length 100
Max. P 0.898611
window310

overview

Window 0

Location 704,310 – 704,410
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 89.10
Mean single sequence MFE -24.82
Consensus MFE -18.63
Energy contribution -18.71
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -2.23
Structure conservation index 0.75
SVM decision value 1.00
SVM RNA-class probability 0.898611
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 704310 100 - 22224390
UUAGUCCCAUUGAAUUUGAUGGCCGCGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACAGCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCGCGCGCGU
......(((((......))))).(((((....(((((.((((..(((((..........)).)))...)))).)))))..(((((....)))))))))). ( -25.80)
>DroSec_CAF1 20506 100 - 1
UUAGCCCCAUUGAAUUUGAUGGCCGUGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACAGCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCGCGCGCGU
......(((((......))))).(((((....(((((.((((..(((((..........)).)))...)))).)))))..(((((....)))))))))). ( -23.90)
>DroEre_CAF1 23774 100 - 1
UUAGCCCCAUUGAAUUUGAUGGCCGCGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACACCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCGCAUGUGU
......(((((......)))))..((((((..(((((.......((((((((.(((............)))))))))))..)))))..))))))...... ( -22.00)
>DroYak_CAF1 20131 100 - 1
UUAGCCCCAUUGAAUUUGAUGGCCGCGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACAGCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCAUGUGUGU
...((.(((((......)))))..((((((.............))))))..........)).............(((((.(((((....))))).))))) ( -20.42)
>DroAna_CAF1 26140 100 - 1
CUAGCCCCAUUGAAUUUGAUGGGCGCGCAUAAAUGUAAUUAUAAUGGGCAUUCCAUGCAGAUAUGUGCAUAACUGCAUAAGUACAUUAAUGCGUUUCCCG
...((((((((......)))))).))((((.((((((.((((.((((.....))))((((.(((....))).)))))))).)))))).))))........ ( -32.00)
>consensus
UUAGCCCCAUUGAAUUUGAUGGCCGCGCAUAAAUGUAAUUAUAAUGUGCAUUCUAUACAGCAACAAACAUAAAUGCAUAAGUGCAUAAAUGCGCGUGCGU
......(((((......)))))..((((((..(((((.......((((((((...................))))))))..)))))..))))))...... (-18.63 = -18.71 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:53 2006