Locus 2019

Sequence ID X_DroMel_CAF1
Location 5,530,009 – 5,530,104
Length 95
Max. P 0.848205
window3283

overview

Window 3

Location 5,530,009 – 5,530,104
Length 95
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 82.44
Mean single sequence MFE -22.07
Consensus MFE -13.56
Energy contribution -15.56
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.27
Structure conservation index 0.61
SVM decision value 0.78
SVM RNA-class probability 0.848205
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5530009 95 + 22224390
CCACUUUUUGCCGAUAUUAACA---------UAUGUACAUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGACCACUUUCGUCACAC
......((((((((((...((.---------...))....)).)))))))).(((((((((.........))))))))).......((((.......))))... ( -22.80)
>DroSec_CAF1 19711 95 + 1
CCACUUUUUGCCGACAUUAACA---------UAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCACAC
......((((((((((...((.---------...))....)).))))))))..((((((((.........))))))))(((((...........)))))..... ( -24.60)
>DroSim_CAF1 22284 95 + 1
CCACUUUUUGCCGACAUUAACA---------UAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCACAC
......((((((((((...((.---------...))....)).))))))))..((((((((.........))))))))(((((...........)))))..... ( -24.60)
>DroEre_CAF1 20160 98 + 1
---UAUUUUGCCGAUAUCAACAUUAUUAACAUAU-UAGCCCGCACGGCUAAAUGC-AUUUGGUUAUAUCACAAGUGGCACGAAUAUUGGCCACUUUCGUCACA-
---.........(((((.(((........(((.(-(((((.....))))))))).-.....))))))))..(((((((.(((...))))))))))........- ( -22.24)
>DroYak_CAF1 20223 84 + 1
ACACUUUAUGCCGAUAUUAACA-------------UAGCUUGCCCGGCGAAAUGCCAUUUGGUUAUAUCAC-------ACGAAUAUUGGCCACUUUCGUCACAA
.........(((((((((...(-------------(((((.....(((.....)))....)))))).....-------...))))))))).............. ( -16.10)
>consensus
CCACUUUUUGCCGAUAUUAACA_________UAUGUACCUUGCUCGGCGAACUGCCAUUUGGUUAUAUCACAAGUGGCACGAAUAUUGCCCACUUUCGUCACAC
......(((((((...............................)))))))..((((((((.........))))))))(((((...........)))))..... (-13.56 = -15.56 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:16 2006