Locus 2018

Sequence ID X_DroMel_CAF1
Location 5,528,896 – 5,528,991
Length 95
Max. P 0.581674
window3282

overview

Window 2

Location 5,528,896 – 5,528,991
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 82.05
Mean single sequence MFE -42.38
Consensus MFE -29.88
Energy contribution -29.17
Covariance contribution -0.72
Combinations/Pair 1.40
Mean z-score -1.48
Structure conservation index 0.71
SVM decision value 0.10
SVM RNA-class probability 0.581674
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5528896 95 - 22224390
GCCGCCAAUUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUGACGGGAACGCCGGGUGGUGGACCAGCUGGCGCCUCUGGUGCCGGUGCCGGUGC
..((((......((.((((((((((((..(..(....)(....)..)..)(((((.(((....))).)))))))).)))))))).))...)))). ( -48.10)
>DroSim_CAF1 21229 89 - 1
GCCGCUAGCUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUGACGGGAACGCCGGGUGGUGGACCAGCUGGCGCCUCUGGUGCCGGUGC------
((((....)......((((((((((((..(..(....)(....)..)..)(((((.(((....))).)))))))).)))))))))))..------ ( -44.70)
>DroEre_CAF1 19037 89 - 1
GCCGCCAGUUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUGAUGGGCACGCCGGGUGGUGGACCAGCUGGCGCCUCUGGUGCCGGCGC------
(((((((......)))((((((((((......(....).(((.....)))(((((.(((....))).)))))))).)))))))))))..------ ( -46.80)
>DroWil_CAF1 19476 89 - 1
GCCGACAAUUGAAUGGGCACCAGAGCGGGCAGCGAGACGGUUACAGGCACACCAGGAGGCGGUACAGCUGGUGUGUCUGGGAUUGGUGC------
(((..((......)).((......)).))).(((...((((..((((((((((((..(......)..))))))))))))..)))).)))------ ( -33.80)
>DroYak_CAF1 19133 85 - 1
GCCGCCAGUUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUAAUGGGCACGCCCGGUGGUGGACCAGCUGGUGCCUCUGGUGCUG----------
((.(((((......(((((((((..(((((..(....).((.....))..))))).(((....))).))))))))))))))))..---------- ( -39.00)
>DroPer_CAF1 35974 89 - 1
GCGGCUAGCUGAAUGGGUACCAGGGCUGGCAGCGAGACGGUAACCGGCACACCGGGAGGAGGUCCGGCUGGUGCCUCUGGGGCUGGUGC------
(((.((((((..(.(((((((((.(((((..((......))..)))))...(((((......)))))))))))))).)..)))))))))------ ( -41.90)
>consensus
GCCGCCAGUUGAAUGGGCACCAGGGCGGGCAGGGAGACGGUGACGGGCACGCCGGGUGGUGGACCAGCUGGCGCCUCUGGUGCCGGUGC______
.(((((.......(((...))).))))).........((((..((((..((((((.(((....))).))))))..))))..)))).......... (-29.88 = -29.17 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:15 2006