Locus 2016

Sequence ID X_DroMel_CAF1
Location 5,526,332 – 5,526,425
Length 93
Max. P 0.660830
window3280

overview

Window 0

Location 5,526,332 – 5,526,425
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 79.71
Mean single sequence MFE -34.13
Consensus MFE -26.24
Energy contribution -26.80
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -1.19
Structure conservation index 0.77
SVM decision value 0.27
SVM RNA-class probability 0.660830
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5526332 93 + 22224390
CGUCGGUGGAUCUGGCCUUCAGCAUUCGCCGUGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUGAGAUUAAAUGAUGCUUUUCUUCGC
((((((((((((((.....))).)))))))((.(.(((((((.(((((.......))))).))))))).).)).....))))........... ( -37.70)
>DroSec_CAF1 16219 91 + 1
CGUCGGUGGAUCUGGCCUUCAGCAUCCGCCGGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUGAGAUGAAAUGAUGCAGUU--GGGC
((((((((((((((.....))).)))))))...(.(((((((.(((((.......))))).))))))).))))).............--.... ( -40.30)
>DroSim_CAF1 18758 91 + 1
CGUCGGUGGAUCUGGCCUUCAGCAUCCGCCGGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUAGGUGAGAUUUAAUGAUGCAGUG--GGGC
..((((((((((((.....))).)))))))))..(.(((((.(((..(.....)..)))..((((.((........))..)))))))--)).) ( -35.20)
>DroEre_CAF1 16490 91 + 1
CCACGGUGGACCUGGCCUUCAGCAUCCACAAGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUAAGAUGAAAUGCUGCGCAU--ACGC
.(((.(((((.(((.....)))..)))))...)))(((((((.(((((.......))))).)))))))........((((...))))--.... ( -34.50)
>DroYak_CAF1 16560 91 + 1
CGUCGGUGGAUCUGGGCUUCAGCAUCCGCAAGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUGAGAUUAAAUGAUGCACAC--UCGC
((((((((((((((.....))).))))))((..(.(((((((.(((((.......))))).))))))).)..))...))))).....--.... ( -36.20)
>DroAna_CAF1 16773 84 + 1
CCACCCUGGACCUGAUGUUCAGCAUUCGGAAAGUGUCCCACGGUGGCCUGGAUGUACGAAGUGUGGGUGAGUCUUAGUCCU---------UAC
.((((((((((.....)))))((((((((.....((((....).))))))))))).........)))))............---------... ( -20.90)
>consensus
CGUCGGUGGAUCUGGCCUUCAGCAUCCGCAAGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUGAGAUUAAAUGAUGCACUU__GCGC
.....(((((((((.....))).))))))......(((((((.(((((.......))))).)))))))......................... (-26.24 = -26.80 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:13 2006