Locus 2011

Sequence ID X_DroMel_CAF1
Location 5,517,924 – 5,518,041
Length 117
Max. P 0.567824
window3271

overview

Window 1

Location 5,517,924 – 5,518,041
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 95.19
Mean single sequence MFE -26.53
Consensus MFE -23.90
Energy contribution -24.06
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.16
Structure conservation index 0.90
SVM decision value 0.07
SVM RNA-class probability 0.567824
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5517924 117 - 22224390
ACCAGCAAAUUAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGAAGAAGCAGAGGUGCUAGGGGUGAGCACAAAAUAGUGUGCU
.(((((...................(((......))).(((((((((....)).)((........................))))))))))).))....((((((......)))))) ( -26.46)
>DroSec_CAF1 8043 117 - 1
ACCAGCAAAUUAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGAGGAAGCAGAGGUGCUAGGGGUGAGCACAAAAUAGUGUGCU
.((((((..((.........(((.....)))....((..((((((((....)).).(.....)...........)))))..)).))..)))).))....((((((......)))))) ( -26.90)
>DroSim_CAF1 7935 117 - 1
ACUAGCAAAUUAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGAGGAAGCAGAGGUGCUAGGGGUGAGCACAAAAUAGUGUGCU
.((((((..((.........(((.....)))....((..((((((((....)).).(.....)...........)))))..)).))..)))))).....((((((......)))))) ( -28.70)
>DroEre_CAF1 8088 111 - 1
ACUAGCAAAUCAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGA------AGAGGUGCUAGGGGUGAGCAUAAAAUAGUGUGCU
.((((((..((..(.....).((.((((((.....))..((.....))...))))))....................------.))..)))))).....((((((......)))))) ( -25.30)
>DroYak_CAF1 7987 111 - 1
ACUAGCAAAUCAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGA------AGAGGUGCUAGGGGUGAGCAUAAAAUAGUGUGCU
.((((((..((..(.....).((.((((((.....))..((.....))...))))))....................------.))..)))))).....((((((......)))))) ( -25.30)
>consensus
ACUAGCAAAUUAAGAAAUUCAGCACGUGGCUUAACGCAACCUCUCCGGAAACGCGGCGAAAAGAAAAGGAAAGAAGA_GAAGCAGAGGUGCUAGGGGUGAGCACAAAAUAGUGUGCU
.(((((...................(((......))).(((((((((....)).).(.....)....................))))))))))).....((((((......)))))) (-23.90 = -24.06 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:05 2006