| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,509,974 – 5,510,084 |
| Length | 110 |
| Max. P | 0.962070 |
| Location | 5,509,974 – 5,510,084 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 73.97 |
| Mean single sequence MFE | -34.90 |
| Consensus MFE | -21.87 |
| Energy contribution | -21.82 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.962070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5509974 110 - 22224390 GCAUUGUUAAUAUUGGCGAAACGCGCGCCGAUCACCUGGCGGAUAUCAAGAUAUCCGCCAAGUGCGGCGAUGUCAUACCCAAACUGUUCGACUUUCGCAA-----UU----CGAAAAGC ...............((((((....(((((..(((.((((((((((....)))))))))).))))))))..(((..((.......))..)))))))))..-----..----........ ( -37.80) >DroVir_CAF1 509 118 - 1 CCAUAGUCAAUAUUGGGGAGACGCGUGCGGAUCAUUUGGCCGACAUCAAAAUCUCGGCCAAGUGUGGCGAUGUGAUACCCAAGCUCUUCGAUUAUCGUGCCACAACCUAGG-CAAACUC ..((((((....(((((....(((((.((...(((((((((((.((....)).)))))))))))...)))))))...))))).......))))))..((((........))-))..... ( -38.50) >DroGri_CAF1 220 115 - 1 CCAUUGUCAAUAUUGGUGAGACGCGAGCGGAUCAUUUGGCCGACAUCAAAAUCUCGGCCAAGUGUGGCGAUGUGAUACCCAAACUCUUUGAUUUUAGCAACAGAG---AAG-CAUAGCA .((((((((........((..((....))..))((((((((((.((....)).)))))))))).))))))))...........(((((((.......))).))))---...-....... ( -31.20) >DroWil_CAF1 74 110 - 1 CCAUUGUCAAUAUUGGUGAUACGCGAGCAGAUCAUUUGGCUGACAUUAAAAUCUCGGCCAAAUGUGGCGAUGUGAUACCAAAACUCUUUGAUUUUCGUAA-----AA----CGAAUCCC .....(((((..((((((.((((...((....(((((((((((.((....)).)))))))))))..))..)))).))))))......))))).((((...-----..----)))).... ( -30.40) >DroMoj_CAF1 74 118 - 1 CCAUUGUCAACAUUGGAGAGACGCGGGCCGACCACUUGGCUGACAUCAAGAUCUCCGCCAAGUGCGGCGAUGUGUUGCCCAAGCUCUUCGACUAUCGUCCCACAACUUAAA-GAAAAAC ...((((.....((((.(..(((((.((((..((((((((.((.((....)).)).))))))))))))..)))))..))))).......(((....)))..))))......-....... ( -34.30) >DroAna_CAF1 27 110 - 1 CUAUAGUUAAUAUUGGCGACACCCGGGCCGAUCAUUUGGCGGACAUCAAGAUAUCCGCCAAGUGCGGCGACGUGCUCCCCAAGCUCUUUGACUACCGUUC-----UG----CUAAAAGU ...(((((((..((((.(((((....((((..(((((((((((.((....)).)))))))))))))))...))).)).)))).....)))))))......-----..----........ ( -37.20) >consensus CCAUUGUCAAUAUUGGCGAGACGCGAGCCGAUCAUUUGGCCGACAUCAAAAUCUCCGCCAAGUGCGGCGAUGUGAUACCCAAACUCUUCGACUAUCGUAA_____CU_____GAAAACC ............((((.(...((((.((....(((((((((((.((....)).)))))))))))..))..))))...)))))..................................... (-21.87 = -21.82 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:58 2006