| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,502,632 – 5,502,745 |
| Length | 113 |
| Max. P | 0.999010 |
| Location | 5,502,632 – 5,502,745 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.16 |
| Mean single sequence MFE | -33.08 |
| Consensus MFE | -13.10 |
| Energy contribution | -12.98 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.40 |
| SVM decision value | 3.33 |
| SVM RNA-class probability | 0.999010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5502632 113 + 22224390 AACUGUAUUAGCUUGCUUAGUGAGCAAAUGGCGAACACAGGGUAAAACUAGAUAUUACCACCACCAAAUCCAACAAUGU----G---UGCCAUACAUAAUGGCGCGCACUGUACGCCCGA ..........(((..(...)..)))....((((...(((((((((.........))))).................(((----(---((((((.....)))))))))))))).))))... ( -34.00) >DroSec_CAF1 27158 115 + 1 AACUGUAUUAGCUGGUAUAGUGAGCAAAUGGCGAACAUAGGGUAAAACUAGAUAUUGCCACCAU-AAAUCCAGCAAUGU----GCGGUGCCAUACAUAAUGGCGCGCACUGUACGCCCGA ....((((..(((((....(((.(....((((((...(((.......)))....))))))))))-....)))))...((----(((.((((((.....))))))))))).))))...... ( -35.80) >DroSim_CAF1 20622 112 + 1 AUCUGUAUUUGCUUGUUUAGUGAGCAAAUUGCGAACAUAGGGUAAAACUAGAUAUUGCCACCAU-UAAUCCAGCAAUGU----G---UGCCAUUCAUAAUGGCGCGCACUGUACGCCCGA ...((((((((((..(...)..)))))).))))......((((.......(((..((....)).-..)))..(((.(((----(---((((((.....)))))))))).)))..)))).. ( -31.80) >DroEre_CAF1 38034 107 + 1 AAUUAUAUUGGCUUGUCCAGUGAGCCA-GCGCAGGCGAAGUGCAUAACUU-------UCGUUAU-AAAUC----CACAUAAAUCCAAAGCCAUACACAAUGGCACGCACUGUAGCGCCGA .......((((((..(...)..)))))-)....((((.((((((((((..-------..)))))-.....----..............(((((.....)))))..)))))....)))).. ( -33.00) >DroYak_CAF1 29103 87 + 1 AAAUGUAUUGGCUUGUAUGGUGAGCUA-UAGCAAAUGAAAGGCGAAAGC-------------------------AAUGU-------GUGCCAUACACAAUGGCACGCACUGUACCGCUGA ...(((..(((((..(...)..)))))-..))).......((((...((-------------------------(.(((-------(((((((.....)))))))))).)))..)))).. ( -30.80) >consensus AACUGUAUUAGCUUGUAUAGUGAGCAAAUGGCGAACAAAGGGUAAAACUAGAUAUU_CCACCAU_AAAUCCA_CAAUGU____G___UGCCAUACAUAAUGGCGCGCACUGUACGCCCGA ....((((..((.......((..((.....))..))....................................................(((((.....)))))..))...))))...... (-13.10 = -12.98 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:56 2006