Locus 2003

Sequence ID X_DroMel_CAF1
Location 5,501,673 – 5,501,765
Length 92
Max. P 0.660232
window3260

overview

Window 0

Location 5,501,673 – 5,501,765
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 75.16
Mean single sequence MFE -26.56
Consensus MFE -10.99
Energy contribution -12.33
Covariance contribution 1.34
Combinations/Pair 1.39
Mean z-score -2.05
Structure conservation index 0.41
SVM decision value 0.27
SVM RNA-class probability 0.660232
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5501673 92 - 22224390
GCUGCUCCAGCGGUAACAACAACGGCUGC---AACUACGGCGGUCACCAGCCAGCCGAGAUCGCACUUUACGAGCAGCCACCAUCACUACCACUU
((((...))))((((........((((((---..((.(((((((.....))).)))))).(((.......)))))))))........)))).... ( -31.29)
>DroGri_CAF1 30685 89 - 1
GUUGCCGUUGCCGUUACC---ACAGCACCACCCAGU---GUGGUGACCACUCAGCCGCGUACCCACUUCACGACCAGUCACCAUCACUACCACUU
(((((.((((..((((((---(((.(........))---))))))))....)))).))).)).........((....))................ ( -18.10)
>DroSec_CAF1 26219 89 - 1
GCUGCUCCAGCGGUAACA---ACGGCUGC---AACUACGGCGGUCAGCAGCCAGCCGAGGUCGCACUUCACAAGCAGCCACCAUCACUACCACUU
(((((....)))))....---..((((((---......((((((.....))).)))((((.....))))....))))))................ ( -30.40)
>DroSim_CAF1 19675 89 - 1
GCUGCCCCAGCGGUAACA---ACAGCUGC---AACUACGGCGGUCACCAGCCAGCCGAGGUCGCACUUCACGAGCAGCCACCAUCACUACCACUU
((((...))))((((...---...(((((---......((((((.....))).)))((((.....))))....))))).........)))).... ( -26.66)
>DroEre_CAF1 37036 81 - 1
--------AGCUGCUGCC---CCAGCAGC---AACUACGGCGGUCACCAGCCAGCCGAGAUCGCACUUCACGAGCAGCCACCAUCACUACCACUU
--------.(((((((..---.)))))))---......((((((.....))).((((.((.......)).)).)).)))................ ( -24.20)
>DroWil_CAF1 59947 89 - 1
GCGGCCACCUCGGUGACU---ACGGUGGC---CUCUGCGGUGGUCACCAAUCAGCCGCGUCCACAUUUCACCAGCAGCCAUCAUCAUUACCAUUU
(((((......(((((((---((.(..(.---..)..).))))))))).....)))))..................................... ( -28.70)
>consensus
GCUGCCCCAGCGGUAACA___ACAGCUGC___AACUACGGCGGUCACCAGCCAGCCGAGAUCGCACUUCACGAGCAGCCACCAUCACUACCACUU
(((((..((((.((.......)).)))).........(((((((.....))).))))................)))))................. (-10.99 = -12.33 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:55 2006