| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,500,758 – 5,500,864 |
| Length | 106 |
| Max. P | 0.822104 |
| Location | 5,500,758 – 5,500,864 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.12 |
| Mean single sequence MFE | -24.65 |
| Consensus MFE | -17.46 |
| Energy contribution | -17.52 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.822104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5500758 106 - 22224390 -CACAUUCCAUUUUCCGU---UUAGGUGUACUAUUUGUACUUGUACAUUGGCAGCAUGAUAUUCUUGCUCUUCAUGUACGCCACUUUGAUAUGGGGUCGUCCCAAGUUAC -.................---...(((((((.....))))..((((((.((.((((.(.....).))))))..)))))))))....((((.((((.....)))).)))). ( -24.50) >DroVir_CAF1 40078 102 - 1 -----UUUUUCUUUUCUU---CCAGGUCUACUAUUUGUACUUGUACAUUGGAAGCAUGAUCUUUCUGCUCUUUAUGUACGCCACACUGCUUUGGGGACGUCCCAAGCUGC -----.............---...(((.(((.....)))...((((((.(((.(((.((....))))))))..))))))))).....((((.(((.....)))))))... ( -23.50) >DroGri_CAF1 29084 101 - 1 ------UUUCUUCAUAUU---UUAGGUGUACUAUUUGUACUUGUACAUUGGUAGCAUGAUCUUCCUCCUCUUUAUGUACGCCACACUGCUCUGGGGUCGUCCGAAGCUGC ------............---...(((((((((..((((....)))).)))).((((((............))))))))))).....(((.((((....)))).)))... ( -20.40) >DroMoj_CAF1 33763 107 - 1 GCAACUUCUGCCUUUCUU---CCAGGUUUACUAUUUGUAUUUGUAUAUUGGAAGCAUGAUCUUUUUGCUGUUCAUGUACGCCACGCUGCUCUGGGGACGACCCAAGCUGC ((..............((---((((...(((...........)))..))))))((((((.(........).))))))..))...((.(((.((((.....))))))).)) ( -25.80) >DroAna_CAF1 26960 108 - 1 -UCC-UGCCACUCCCUGUCCACCAGGUCUACUAUUUGUACUUGUACAUUGGCAGCAUGAUCUUCCUGCUCUUCAUGUACGCCACUCUGCUCUGGGGAAGGCCCAAGCUUC -...-.((.....(((.(((.((((((........((((....)))).((((.((((((............))))))..))))....)).)))))))))).....))... ( -26.90) >DroPer_CAF1 27712 102 - 1 -----UCUCGUACUCUUU---UCAGGUAUACUAUCUAUAUUUGUAUAUUGGUAGCAUGAUCUUUCUGCUAUUCAUGUACGCCACGUUGCUGUGGGGUCGCCCCAAGCUGC -----...(((.......---..(((((((.....)))))))((((((..((((((.((....))))))))..))))))...)))..(((.(((((...))))))))... ( -26.80) >consensus _____UUCCACUCUCCUU___CCAGGUCUACUAUUUGUACUUGUACAUUGGAAGCAUGAUCUUCCUGCUCUUCAUGUACGCCACACUGCUCUGGGGACGUCCCAAGCUGC ........................(((.(((.....)))...((((((..(.((((.((...)).)))).)..))))))))).....(((.((((.....)))))))... (-17.46 = -17.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:54 2006