| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 698,822 – 698,915 |
| Length | 93 |
| Max. P | 0.604168 |
| Location | 698,822 – 698,915 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 86.80 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -22.10 |
| Energy contribution | -23.35 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 698822 93 + 22224390 CCG--GGAAACAUCGCCGGGCAACGGUGGCUCUAUCUCUCUGAGCUACCCAUGAUCUGGAUUUGGUAGGGGGAGCAUGUAAUGCACAGAGAGAAA ...--(....).((((((.....)))))).....((((((((.(((.(((...(((.......)))...)))))).((.....)))))))))).. ( -33.00) >DroSec_CAF1 15227 93 + 1 CCG--GGCAACAUCGCCGGGCAACGGUGGCUCUAUCUCUCUGAGCUACCCAUGAUCUAGAUGUGGGAGGGGGAGCAUGUAAUGCACAGAGAGAAA ..(--(((.....(((((.....)))))))))..((((((((.(((.(((....(((.......)))..)))))).((.....)))))))))).. ( -33.40) >DroEre_CAF1 18285 95 + 1 CAGAGGCAAACAUCGCCGGGCAACGGUAGCUCUAUCUCUCUGAGCUACCCAUGAUCUGGCUGCGGGAAUGGGAGCAUGAAAUGCACAGAGAGAAA ....(((.......)))((((.......))))..((((((((.(((.(((((..((((....)))).)))))))).((.....)))))))))).. ( -33.70) >DroYak_CAF1 14734 95 + 1 CCAAGGCAAACAUCGCCGGGCAACGGUAGCCCUAUCUCUCUGAGCUUCCAGUGAUCUGGCUGUGGGAGGGGGAGCCAGAAAUGCACUUAGAGAAA ....(((.......)))((((.......))))....((((((((....((....(((((((.(.......).)))))))..))..)))))))).. ( -31.10) >consensus CCG__GCAAACAUCGCCGGGCAACGGUAGCUCUAUCUCUCUGAGCUACCCAUGAUCUGGAUGUGGGAGGGGGAGCAUGAAAUGCACAGAGAGAAA ............((((((.....)))))).....((((((((.(((.(((....((.......))....))))))..(.....).)))))))).. (-22.10 = -23.35 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:50 2006