Locus 1995

Sequence ID X_DroMel_CAF1
Location 5,484,676 – 5,484,768
Length 92
Max. P 0.569634
window3251

overview

Window 1

Location 5,484,676 – 5,484,768
Length 92
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 85.87
Mean single sequence MFE -22.30
Consensus MFE -17.72
Energy contribution -18.17
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.77
Structure conservation index 0.79
SVM decision value 0.07
SVM RNA-class probability 0.569634
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5484676 92 - 22224390
GUUCUGGGUUCUGGGUUCUGGGUUCAGGGUGCGGCUUCUAUAGAUUCCCCGCAUACUUUUUGCGCCCGCUCACCACUCACCUU-UUACCUAUC
....(((((...((((....(((...(((((.(((.((....))......(((.......))))))))))))))....)))).-..))))).. ( -26.40)
>DroSec_CAF1 9749 83 - 1
----------CCGGGUUCUGGGCUCAGGGUGCGACUUCGAUAGAUUCCCCGCAUUCUUUUUCCGCCCUCUCACCACUCACCUCCUUACCUAUC
----------..((.....((((..((((((((...((....)).....))))))))......)))).....))................... ( -18.70)
>DroSim_CAF1 3139 83 - 1
----------CCGGGUUCUGGGCUCAGGGUGCGGCUUCGAUAGAUUCCCCGCAUACUUUUUGCGCCCUCUCACCACUCACCUCCUUACCUAUC
----------..((.....((((.((((((((((..((....))....))))))....)))).)))).....))................... ( -21.80)
>consensus
__________CCGGGUUCUGGGCUCAGGGUGCGGCUUCGAUAGAUUCCCCGCAUACUUUUUGCGCCCUCUCACCACUCACCUCCUUACCUAUC
.............(((...((((.((((((((((..((....))....))))))....)))).))))....)))................... (-17.72 = -18.17 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:47 2006