| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,471,860 – 5,471,961 |
| Length | 101 |
| Max. P | 0.600298 |
| Location | 5,471,860 – 5,471,961 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 82.12 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -14.52 |
| Energy contribution | -15.30 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.600298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5471860 101 + 22224390 ACUGAAUUUGAUUCGCAAACUUUGGAUAUAUGAUUCCCCCGAUACGGAUCCUACGAUUCAGAUCAGAGAUUCAGAUUCAGAUCCAGAUCCAGAUCCAGAUC .((((((((((.((.(.......(((........)))...(((..(((((....)))))..))).).)).))))))))))(((..(((....)))..))). ( -24.50) >DroSec_CAF1 11713 100 + 1 ACUGAAUUUGAUUCGCAAACUUUGGAUAUAUGAUUCACCGGAUACGGAUCCUACGAUCCCGAUCC-CGAUCCCGAUCAAGAUUCAGAUCCAGAUCCAAAUC ....................(((((((...(((.((...((((..(((((....)))))..))))-.(((....)))..)).))).)))))))........ ( -23.40) >DroYak_CAF1 10554 88 + 1 ACUGAAUUUGAUUCGCAAACUUUGGAUAUAUGAUUCCCCGGAUACGGAUCCUACGAUCCUGAUCC-U------------GAUCCUGAUCCAGAUGUAGAUC .........((((..((...(((((((....((((....((((..(((((....)))))..))))-.------------))))...)))))))))..)))) ( -22.80) >consensus ACUGAAUUUGAUUCGCAAACUUUGGAUAUAUGAUUCCCCGGAUACGGAUCCUACGAUCCAGAUCC_AGAU_C_GAU__AGAUCCAGAUCCAGAUCCAGAUC .(((.(((((..((.........(((........)))..((((..(((((....)))))..))))..............))..))))).)))......... (-14.52 = -15.30 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:41 2006