Locus 199

Sequence ID X_DroMel_CAF1
Location 678,731 – 678,825
Length 94
Max. P 0.698953
window307

overview

Window 7

Location 678,731 – 678,825
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 74.98
Mean single sequence MFE -30.82
Consensus MFE -18.95
Energy contribution -19.82
Covariance contribution 0.86
Combinations/Pair 1.33
Mean z-score -1.40
Structure conservation index 0.62
SVM decision value 0.35
SVM RNA-class probability 0.698953
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 678731 94 + 22224390
UGAGCUUGCUGAGGCGGUGGCUUGGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUGAAAACAGGUAAG-GGAAAGAAAGC--AAAAGGUUA
...((((((((((..((((((....))))))..)))))).((((((....)))).))(((((....)))))...-.......))))--......... ( -36.30)
>DroSec_CAF1 2707 94 + 1
UGAGCUUGCUGGGGCGGUGGCUUCGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUAUAAACAGGUAAG-GGAAAGAAAGC--AAAAGGUUA
...((((((((((..((((((....))))))..)))))).((((((....)))).))((((......))))...-.......))))--......... ( -35.70)
>DroEre_CAF1 2798 92 + 1
GGAGCUUGUUGGGGUGGUGGCUUGGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUAAAAACAGGCAAGGGGAAAGAAAG-----GAGGUUA
...(((((((((((..((((((.((........)).))))))..))))..((......))....)))))))..............-----....... ( -32.20)
>DroWil_CAF1 2911 91 + 1
UGUG---ACUGUGCUUGGGGCUUGGGCCACUCACUCAGUCGCUGCUCCAUAGCUCGCACCUUAAAGCCAGAAAA-AUACGUAGAGG--AAACAGUUG
...(---((((((((((((((...(((.(((.....))).))))))))).))).....((((............-.......))))--..)))))). ( -23.51)
>DroYak_CAF1 2174 82 + 1
UGAGCUUGUUGGGGCGGUGGCUUGGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUGGAAA---------GGAAAGGAA------GCGGUUA
...(((...(((((((((((((.((........)).))))))))))))).))).(((.(((.....---------....)))..------))).... ( -36.20)
>DroAna_CAF1 3922 90 + 1
UGAG------GUGGCGGUGGUUUGGGCCACUCACUCAGCCGCUGUUCCAUAGCACGCACCUAAGGACGAGCGAG-AAAAAAAAAGGAUAAAAGGAUA
((((------.((..((((((....))))))))))))..((((..(((.(((.......))).)))..))))..-...................... ( -21.00)
>consensus
UGAGCUUGCUGGGGCGGUGGCUUGGGCCACUCACUCAGCCGCUGCUCCAUGGCACGCACCUAAAAACAGGCAAG_GGAAAGAAAG___AAAAGGUUA
.......((((((..((((((....))))))..)))))).((((((....)))).))........................................ (-18.95 = -19.82 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:48 2006