| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,448,058 – 5,448,160 |
| Length | 102 |
| Max. P | 0.662259 |
| Location | 5,448,058 – 5,448,160 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.61 |
| Mean single sequence MFE | -20.98 |
| Consensus MFE | -17.67 |
| Energy contribution | -17.70 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5448058 102 + 22224390 AAAGUGUGUAAGUAGUAAAUACGCUUGAGUAUUAUUAACGUAAAUGCAAAAUUGCCAAUUUCGAGUGUAUUUCCUGUCAACAGAAAUUUUCCUCUU------------C---UUUCC--- ....(.(((...(((.(((((((((((((..((((....))))..(((....)))....))))))))))))).)))...))).)............------------.---.....--- ( -17.30) >DroVir_CAF1 130897 115 + 1 --UCUACGUAAGUAGUAAAUACGCUCGAGUAUUAUUAACGUAAAUGCAAAAUUGCCAAUUUCGAGUGUAUUUCCUGUCAACAGAAAUUUCCUUCAUGGCGUCUCGCUACCACUUUAC--- --.((((....)))).(((((((((((((..((((....))))..(((....)))....))))))))))))).(((....)))............(((((...))))).........--- ( -25.70) >DroGri_CAF1 109148 110 + 1 UGUAAGUGUAAGUAGUCAAUACGCUCGAGUAUUAUUAACGUAAAUGCAAAAUUGCCAAUUUCGAGUGUAUUUCCUGUCAACAGAAAUUUCCAUCGU----------UACCACUUUGCCCC .(((((((...((((.(((((((((((((..((((....))))..(((....)))....))))))))))))..(((....)))...........))----------)))))).))))... ( -21.30) >DroMoj_CAF1 136838 103 + 1 --UAAAUGUAAGUAGUAAAUACGCUCGAGUAUUAUUAACGUAAAUGCAAAAUUGCCAAUUUCGAGUGUAUUUCCUGUCAACAGAAAUUUCCUU------------CUACCACUUUGC--- --.........((((.(((((((((((((..((((....))))..(((....)))....))))))))))))).(((....)))..........------------))))........--- ( -20.00) >DroAna_CAF1 71689 97 + 1 GCACUG-GUAAGUAGUAAAUACGCUCGAGUAUUAUUAACGUAAAUGCAAAAUUGCCAAUUUCGAGUGUAUUUCCUGUCAACAGAAAUUCUCUUCUA------------------UU---- ...(((-.....(((.(((((((((((((..((((....))))..(((....)))....))))))))))))).)))....))).............------------------..---- ( -20.90) >DroPer_CAF1 86588 96 + 1 UGCUAGCGUAAGUAGUAAAUACGCUCGAGUAUUAUUAACGUAAAUGCAAAAUUGCCAAUUUCGAGUGUAUUUCCUGUCAACAGAAAUUUCCUUCAC------------------------ (((((.(....))))))((((((((((((..((((....))))..(((....)))....))))))))))))..(((....))).............------------------------ ( -20.70) >consensus __UAAGUGUAAGUAGUAAAUACGCUCGAGUAUUAUUAACGUAAAUGCAAAAUUGCCAAUUUCGAGUGUAUUUCCUGUCAACAGAAAUUUCCUUCAU____________C___UUUGC___ ...........((((.(((((((((((((..((((....))))..(((....)))....))))))))))))).))).).......................................... (-17.67 = -17.70 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:32 2006