Locus 197

Sequence ID X_DroMel_CAF1
Location 675,257 – 675,348
Length 91
Max. P 0.727775
window305

overview

Window 5

Location 675,257 – 675,348
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 86.81
Mean single sequence MFE -28.83
Consensus MFE -23.78
Energy contribution -23.23
Covariance contribution -0.55
Combinations/Pair 1.28
Mean z-score -2.03
Structure conservation index 0.82
SVM decision value 0.42
SVM RNA-class probability 0.727775
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 675257 91 - 22224390
UGGAUAUGCCCGAGCUACAGACGGAAAUGAUCUGCAUCCUGAUCAAGCAGACCUCCCGCCACUUGGGCCAGAAGCUCAGUGUGGGCGUCCA
.((((..(((((.........(((....(.(((((...........))))).)..))).((((.((((.....))))))))))))))))). ( -28.90)
>DroVir_CAF1 2670 91 - 1
UGGACAUGCCGGAGCUACAGACCGAAAUGAUCUGCAUUUUGAUCAAGCAAACCUCCCGACAUAUGGGCCAGAAACUAAGUGUCGGUGUCCA
.(((((((((((.........)))...(((((........))))).)))......(((((((.(((........))).)))))))))))). ( -29.60)
>DroPse_CAF1 5478 91 - 1
UGGACAUGCCCGAGCUGCAGACGGAGAUGAUCUGCAUAUUGAUCAAGCAGACCUCCCGGCACAUGGGCCAGAAGCUCAGUGUCGGCGUCCA
.((((.(((.(((..((((((((....)).))))))..))).....)))......(((((((.(((((.....)))))))))))).)))). ( -34.30)
>DroGri_CAF1 3185 91 - 1
UGGACAUGCCGGAACUACAGACCGAAAUGAUUUGCAUUCUAAUUAAGCAAACCUCCCGACAUAUGGGUCAGAAACUAAGUGUCGGUGUCCA
.(((((((((((.........)))...(((((........))))).)))......(((((((.(((........))).)))))))))))). ( -24.70)
>DroWil_CAF1 2387 91 - 1
UGGAUAUGCCGGAACUGCAAACCGAAAUGAUUUGCAUAUUGAUUAAACAAACUUCCCGACAUAUGGGACAAAAACUAAGUGUCGGCGUCCA
.((((..(((((((.((((((.(.....).))))))..(((......)))..)))).(((((.(((........))).)))))))))))). ( -24.40)
>DroMoj_CAF1 2919 91 - 1
UGGAUAUGCCGGAGCUGCAGACCGAAAUGAUCUGCAUUCUGAUAAAGCAAACCUCCCGACAUAUGGGCCAGAAACUAAGUGUCGGUGUCCA
.(((((((((((((.((((((.(.....).))))))))))).....)))......(((((((.(((........))).)))))))))))). ( -31.10)
>consensus
UGGACAUGCCGGAGCUACAGACCGAAAUGAUCUGCAUUCUGAUCAAGCAAACCUCCCGACAUAUGGGCCAGAAACUAAGUGUCGGCGUCCA
.((((.((((((.........)))...(((((........))))).)))......(((((((.(((........))).))))))).)))). (-23.78 = -23.23 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:45 2006