| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,385,150 – 5,385,266 |
| Length | 116 |
| Max. P | 0.852338 |
| Location | 5,385,150 – 5,385,266 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.18 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -22.00 |
| Energy contribution | -22.75 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5385150 116 + 22224390 CACUCGCUGCCCCGGCGGACUAAGUCUGUUAACUUUUCCGCGCAGUCGAGGCGUGAAAAUAUAAUAACACCUUUUUAAUUAUAUUUGUCUACCCCUUCACU--CCCCA--UUUUUAGUUC ..((((((((....(((((..((((......)))).))))))))).))))..(((((((((((((............))))))))..........))))).--.....--.......... ( -25.70) >DroSec_CAF1 66325 115 + 1 CACUCGCUGCCCCGUCGGACUAAGUCUGUUAACUUUUCCGCGCAGUCGAGGCGUGAAAAUAUAAUAACACCUUUUUAAUUAUAUUUGUCUUCCCCUUCACU--CCCCA--UUUUUAGUG- ((((((((((...(.((((..((((......)))).))))))))).)))((.(((((((((((((............))))))))..........))))).--))...--......)))- ( -22.70) >DroSim_CAF1 53671 115 + 1 CACUCGCUGCCCCGACGGACUAAGUCUGUUAACUUUUCCGCGCAGUCGAGGCGUGAAAAUAUAAUAACACCUUUUUAAUUAUAUUUGUCUUCCCCUUCACU--CCCCA--UUUUUAGUG- ((((((((((...(.((((..((((......)))).))))))))).)))((.(((((((((((((............))))))))..........))))).--))...--......)))- ( -22.70) >DroYak_CAF1 59311 119 + 1 CACUCGCUGCCCCAGCGGACUUAGUCUGUUAACUUUUCCGCGCAGUCGAGGCGUGAAAAUAUAAUAACACCUUUUUAAUUAUAUUUGUCUUCCCCUUCACCUACCCCUUUUUUUCAGUG- ..((((((((....(((((...(((......)))..))))))))).))))..(((((((((((((............))))))))..........)))))...................- ( -24.20) >consensus CACUCGCUGCCCCGGCGGACUAAGUCUGUUAACUUUUCCGCGCAGUCGAGGCGUGAAAAUAUAAUAACACCUUUUUAAUUAUAUUUGUCUUCCCCUUCACU__CCCCA__UUUUUAGUG_ ..((((((((....(((((..((((......)))).))))))))).))))..(((((((((((((............))))))))..........))))).................... (-22.00 = -22.75 + 0.75)
| Location | 5,385,150 – 5,385,266 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.18 |
| Mean single sequence MFE | -30.48 |
| Consensus MFE | -26.95 |
| Energy contribution | -27.57 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5385150 116 - 22224390 GAACUAAAAA--UGGGG--AGUGAAGGGGUAGACAAAUAUAAUUAAAAAGGUGUUAUUAUAUUUUCACGCCUCGACUGCGCGGAAAAGUUAACAGACUUAGUCCGCCGGGGCAGCGAGUG ..(((.....--.((((--.(((((((.(((((((..(..........)..))))..))).))))))).))))(.(((((((((.(((((....)))))..)))))....))))).))). ( -30.10) >DroSec_CAF1 66325 115 - 1 -CACUAAAAA--UGGGG--AGUGAAGGGGAAGACAAAUAUAAUUAAAAAGGUGUUAUUAUAUUUUCACGCCUCGACUGCGCGGAAAAGUUAACAGACUUAGUCCGACGGGGCAGCGAGUG -((((.....--.((((--.(((((((.((.((((..(..........)..)))).))...))))))).))))(.((.((((((.(((((....)))))..)))).)).)))....)))) ( -29.90) >DroSim_CAF1 53671 115 - 1 -CACUAAAAA--UGGGG--AGUGAAGGGGAAGACAAAUAUAAUUAAAAAGGUGUUAUUAUAUUUUCACGCCUCGACUGCGCGGAAAAGUUAACAGACUUAGUCCGUCGGGGCAGCGAGUG -((((.....--.((((--.(((((((.((.((((..(..........)..)))).))...))))))).))))(.(((((((((.(((((....)))))..)))))....))))).)))) ( -30.80) >DroYak_CAF1 59311 119 - 1 -CACUGAAAAAAAGGGGUAGGUGAAGGGGAAGACAAAUAUAAUUAAAAAGGUGUUAUUAUAUUUUCACGCCUCGACUGCGCGGAAAAGUUAACAGACUAAGUCCGCUGGGGCAGCGAGUG -((((........(((((..(((((((.((.((((..(..........)..)))).))...))))))))))))(.(((((((((..((((....))))...)))))....))))).)))) ( -31.10) >consensus _CACUAAAAA__UGGGG__AGUGAAGGGGAAGACAAAUAUAAUUAAAAAGGUGUUAUUAUAUUUUCACGCCUCGACUGCGCGGAAAAGUUAACAGACUUAGUCCGCCGGGGCAGCGAGUG .((((........((((...(((((((.((.((((..(..........)..)))).))...))))))).))))(.(((((((((..((((....))))...)))))....))))).)))) (-26.95 = -27.57 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:08 2006