Locus 196

Sequence ID X_DroMel_CAF1
Location 663,642 – 663,750
Length 108
Max. P 0.558743
window304

overview

Window 4

Location 663,642 – 663,750
Length 108
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 74.70
Mean single sequence MFE -29.62
Consensus MFE -18.58
Energy contribution -18.02
Covariance contribution -0.56
Combinations/Pair 1.50
Mean z-score -1.47
Structure conservation index 0.63
SVM decision value 0.05
SVM RNA-class probability 0.558743
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 663642 108 + 22224390
CGCGGGUAGUCAGUGACAGUUGAUUUAGUUUCGGAACAAAGAGUAUAGAUGUAAUUUGAUACGAAGUUAAAUUAAACGCUCACUGCUUGCGAAAG-----------CCAGAAGAUGCAA
((((((((((.((((....((((((((..((((...((((...(((....))).))))...))))..)))))))).)))).))))))))))...(-----------(........)).. ( -32.50)
>DroSec_CAF1 344 99 + 1
CGCGGGUAGUCAGUGCCAG---------UUCCGGAACAAAGAGUAUACACGUAAUAUGAUACGAAGUUAAAUUGAACGCUCACUGCUCGCGAAAG-----------CCAGAUGAUGCAA
((((((((((..((.((..---------....)).))...((((.....((((......))))..(((......)))))))))))))))))...(-----------(........)).. ( -26.30)
>DroSim_CAF1 354 108 + 1
CGCGGGUAGUCAGUGCCAGUUGAUUUAGUUCCGGAACAAAGAGUAUACACGUAAUAUGAUACGAAGUUAAAUUGAACGCUCACUGCUCGCGAAAG-----------CCAGAUGAUGCAA
((((((((((.((((.((((((((((.(((....)))............((((......))))))))).)))))..)))).))))))))))...(-----------(........)).. ( -28.60)
>DroEre_CAF1 424 119 + 1
UGCGGCUAGUCAGUGCUAGUUGAUUUGGUUCCGUGGGGAAAAGUAUUCUCGUAGUUUGAUAUGAACUUUAGUGAAACUCUCACUAUCCGCAAAAAGCCGAUGAUGCCCGGAUGAUGCAA
((((((((((....)))))))...((((((...((.((((((((....(((((......))))))))))(((((.....))))).))).))...))))))...............))). ( -29.70)
>DroYak_CAF1 447 118 + 1
UGCGGGUAGUCAGUGCUAGUUGAUUUGGUUCCGUAGCAAAAAGUAUUCACUUCAUUUGAAACGAACCCAAAUGAAACGUUCACUAUCCGCAAAAAGCCGAC-CUAUCCGGAUGAUGCAA
((((((((((....((...((.((((((...(((..((((((((....))))..))))..)))...)))))).))..))..)))))))))).....(((..-.....)))......... ( -31.00)
>consensus
CGCGGGUAGUCAGUGCCAGUUGAUUUAGUUCCGGAACAAAGAGUAUACACGUAAUUUGAUACGAAGUUAAAUUAAACGCUCACUGCUCGCGAAAG___________CCAGAUGAUGCAA
((((((((((.((((............(((....)))..............(((((((((.....)))))))))..)))).))))))))))............................ (-18.58 = -18.02 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:44 2006