Locus 1952

Sequence ID X_DroMel_CAF1
Location 5,345,672 – 5,345,764
Length 92
Max. P 0.819114
window3174

overview

Window 4

Location 5,345,672 – 5,345,764
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 80.15
Mean single sequence MFE -41.60
Consensus MFE -24.12
Energy contribution -27.78
Covariance contribution 3.67
Combinations/Pair 1.07
Mean z-score -2.21
Structure conservation index 0.58
SVM decision value 0.67
SVM RNA-class probability 0.819114
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5345672 92 + 22224390
GGCCGCACUGGCACCCGGAUGCAAUUCUGCGGCUUAUCGCCCAGCUGCAGCUGUCCACAACGCCGC-CUGUCGGUGCGCAGCCAGUCUAAAAA
(((((((((((((..(((.((..((.((((((((........))))))))..))...))...))).-.))))))))))..))).......... ( -36.60)
>DroPse_CAF1 95754 83 + 1
--------CGGCAGGUUAAUGCAGGGCCGCUGCUUGUCGCCCACCUGCAUGUCUCCGCAGCGACGC-UUGGCCGUGCGCAGCCAGUCUGAAA-
--------.(((.((((..((((.(((((..((..(((((.....(((........))))))))))-.))))).)))).)))).))).....- ( -32.10)
>DroSec_CAF1 21077 91 + 1
GGCCGGACUGGCACACGGAUGCAAUUCUGCGGCUUAUCGCCCAGCUGCAGACGGCCACAACGCCGC-CUGUCUGUGCGCAGCCAGUCUGGAA-
..((((((((((.(((((((((...(((((((((........))))))))).(((......)))))-..)))))))....))))))))))..- ( -47.30)
>DroSim_CAF1 18532 92 + 1
GGCCGGACUGGCACCCGGAUGCAAUUCUGCGGCUUAUCGCCCAGCUGCAGACGGCCACAACGCCGCCCUGUCGGUGCGCAGCCAGUCUGGAA-
..((((((((((..(((..((((...(((.(((.....)))))).))))..))).......((((((.....)))).)).))))))))))..- ( -46.20)
>DroEre_CAF1 21453 90 + 1
GGCCGGACCUGCACCCGGAGGCAGCCCUGCGGCUUAUCGCCCAGCUGCAGCCGGCCACAACGACGC-CUAUCGGUGCGGAGCCAGUCUGGA--
..((((((..((..((((..(((((..((.(((.....))))))))))..))))......((.(((-(....))))))..))..)))))).-- ( -41.20)
>DroYak_CAF1 21728 91 + 1
GGCCGGACUGGCAACCGGAUGCAAACCUGCGGCUUAUCGCCCAGCUGCAGUUGGCCACAGCGCCGG-CUGUCGGUGCGCAGCCAGUCUGGAU-
..((((((((((..((((.((((...(((.(((.....)))))).)))).)))).....((((((.-....))))))...))))))))))..- ( -46.20)
>consensus
GGCCGGACUGGCACCCGGAUGCAAUUCUGCGGCUUAUCGCCCAGCUGCAGACGGCCACAACGCCGC_CUGUCGGUGCGCAGCCAGUCUGGAA_
..((((((((((..(((..((((...(((.(((.....)))))).))))..)))......(((((......)))))....))))))))))... (-24.12 = -27.78 +   3.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:40 2006