Locus 195

Sequence ID X_DroMel_CAF1
Location 662,853 – 662,965
Length 112
Max. P 0.820558
window303

overview

Window 3

Location 662,853 – 662,965
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.21
Mean single sequence MFE -36.75
Consensus MFE -26.37
Energy contribution -26.81
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -2.01
Structure conservation index 0.72
SVM decision value 0.68
SVM RNA-class probability 0.820558
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 662853 112 - 22224390
GAUUGG-AGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGUAAA-------UAUACCGAAUGGUGCGAGGCAUACCGAAUACCGCAGAGUAUCUCAGAGUA
.....(-((((((((((((((((..(((((...))))).)))))..((((((((((((.....-------...(((....)))))).))))))))).....))))))).)))))...... ( -39.20)
>DroSec_CAF1 12848 112 - 1
GAUUGG-GGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGUAAA-------UAUACCGAAUGGUGCGAGGCAUACCGAAUACCGCAGAGUAUCUCAGAGUA
..((((-((..((((((((((((..(((((...))))).)))))..((((((((((((.....-------...(((....)))))).))))))))).....)))))))..)))))).... ( -38.80)
>DroSim_CAF1 8784 112 - 1
GAUUGG-GGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGUAAA-------UAUACCGAAUGGUGCGAGGCAUACCGAAUACCGCAGAGUAUCUCAGAGUA
..((((-((..((((((((((((..(((((...))))).)))))..((((((((((((.....-------...(((....)))))).))))))))).....)))))))..)))))).... ( -38.80)
>DroEre_CAF1 8297 111 - 1
GAUUGGGGGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGGAAAUACCGAAUAUACCAAAUAGUGGGCAGCAUACCGAAGAGUGCGAAAUC---------C
.......((((((((((.(((((..(((((...))))).)))))..((((((.((....)).))))))......(((.....))))))((((........))))))))))---------) ( -30.20)
>consensus
GAUUGG_GGGUUUCUGUGGAUGUUUGUUGCAAUGUAACCACGUCACCGGUAUGUCCGUGUAAA_______UAUACCGAAUGGUGCGAGGCAUACCGAAUACCGCAGAGUAUCUCAGAGUA
...........((((((((((((..(((((...))))).)))))..((((((((((((...............(((....)))))).))))))))).....)))))))............ (-26.37 = -26.81 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:42 2006