Locus 1945

Sequence ID X_DroMel_CAF1
Location 5,317,285 – 5,317,393
Length 108
Max. P 0.710874
window3159

overview

Window 9

Location 5,317,285 – 5,317,393
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.70
Mean single sequence MFE -30.46
Consensus MFE -12.35
Energy contribution -12.47
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.79
Structure conservation index 0.41
SVM decision value 0.38
SVM RNA-class probability 0.710874
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5317285 108 - 22224390
AGGCACUCAGCGA-------GUGUCACGUGCUGUGAUAUGCUAACAAACGAAAAGAUA---GAAAAGUAUCUC-GGCAUGAUCGACUU-UAGUGCAGCUGCCUAAAAGUGUGCUAGUCGU
.(((((((...))-------))))).(((((((.(((((.(((.(.........).))---)....))))).)-))))))..(((((.-.((..((.((.......))))..))))))). ( -35.60)
>DroSec_CAF1 53596 104 - 1
AGGCACUGUGCGA-------GUGUCACGUGCUA-GAUACGCUAACAAACGAA-AGAUA---GAAAAGUAUCUC-GGCAUGAACGACUU-UAGUGCAGCUGCCUAAAAGUGUGCUAGUU--
((((((((..(..-------..(((.(((((((-(((((.(((.....(...-.).))---)....)))))).-))))))...)))..-..)..))).)))))...............-- ( -33.90)
>DroSim_CAF1 45073 104 - 1
AGGCACUGUGCGA-------GUGUCACGUGCUA-GAUACGCUAACAAACGAA-AGAUA---GAAAAGUAUCUC-GGCAUGAACGACUU-UAGUGCAGCUGCCUAAAAGUGUGCUAGUU--
((((((((..(..-------..(((.(((((((-(((((.(((.....(...-.).))---)....)))))).-))))))...)))..-..)..))).)))))...............-- ( -33.90)
>DroEre_CAF1 56589 87 - 1
AGGCAGUGUGCGG-------CUGUCACGUGCUG-GAUUUGCUAACGAAGAACCAA------GGAAAGCAUCUC-GGCAUGAUCGACUACUG----------------GCAUGCAUGAU--
.....((((((((-------..(((.(((((((-(...((((..(..........------)...))))..))-))))))...)))..)).----------------)))))).....-- ( -24.00)
>DroYak_CAF1 56820 102 - 1
AGGCAGUGUGCGGUGUGCGAGUGUCACGUGCUAUGCUAUGCUAACGAACAAGAAAGUGGAAGCGAAGUAUCUCAGGCAUGAUCGACUACUA----------------GUACGUAUGAA--
..((.....))...((((.((((((.(((((((((((.((((..((..........))..)))).)))))....))))))...))).))).----------------)))).......-- ( -24.90)
>consensus
AGGCACUGUGCGA_______GUGUCACGUGCUA_GAUAUGCUAACAAACGAA_AGAUA___GAAAAGUAUCUC_GGCAUGAUCGACUU_UAGUGCAGCUGCCUAAAAGUGUGCUAGUU__
.(((((..............))))).((((((..(((((...........................)))))...))))))........................................ (-12.35 = -12.47 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:27 2006