Locus 194

Sequence ID X_DroMel_CAF1
Location 662,632 – 662,748
Length 116
Max. P 0.987570
window302

overview

Window 2

Location 662,632 – 662,748
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 79.29
Mean single sequence MFE -34.05
Consensus MFE -23.91
Energy contribution -24.35
Covariance contribution 0.44
Combinations/Pair 1.22
Mean z-score -2.42
Structure conservation index 0.70
SVM decision value 2.08
SVM RNA-class probability 0.987570
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 662632 116 + 22224390
CAUACAAAAAGCAAACUC----CACAUUACAGCAGAGCGCAAGCUGUCAAAGCUGUAGACCUGGGAAAAUAGCUUUGCGGGAAAGCCCGGAAACUCGAAAGCGCCAUUUUCAGGGGCAUG
..........((......----....((((((((.(((....))).)....))))))).((((..((....(((((.((((....)))(....)..))))))....))..)))).))... ( -36.80)
>DroSec_CAF1 12623 115 + 1
CAUACAGAAAGCAAGCCC----CACAUUACACAAGAGCGCAAGCUGUCAAAGGUGUAGACUUGGGAAAAUAGCU-UGCGGGAAAACCCGGAAACUCGAAAACGUUAUUUUCAGGGGCAUG
..............((((----(...((((((.(.(((....))).).....))))))......(((((((((.-...(((....)))(....)........))))))))).)))))... ( -38.00)
>DroSim_CAF1 8555 119 + 1
CAUACAAAAAGCAAGCACAUUACACAUUACACAAGAGCGCAAGCUGUGAAAGCUGUAGACUUGGGAAAAUAGCU-UGCGGGAAACCCCGGAAACUCGAAAACGUUAUUUUCAGGGGCAUG
..........((((((...(((((..((.((((...((....)))))).))..))))).(....)......)))-)))......(((((....)..(((((.....))))).)))).... ( -30.00)
>DroEre_CAF1 8087 102 + 1
-------------UACCU----CAAUUUACGGCGGAGCGAAAGCUGUCAAAGCUGUAGGCCUAGAAAACUAGCU-GGCGGGAAAGCCCGGAAAUGCGAAAACUCUAUUUUCAGGGGCACG
-------------...((----(...(((((((.((((....))..))...)))))))(((.((........))-))))))...(((((((((((.((....)))))))))..))))... ( -31.40)
>consensus
CAUACAAAAAGCAAACCC____CACAUUACACAAGAGCGCAAGCUGUCAAAGCUGUAGACCUGGGAAAAUAGCU_UGCGGGAAAGCCCGGAAACUCGAAAACGCUAUUUUCAGGGGCAUG
..........................((((((((.(((....))).)....))))))).(((..(((((((((.....(((....)))(....)........)))))))))..))).... (-23.91 = -24.35 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:41 2006