| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,308,541 – 5,308,656 |
| Length | 115 |
| Max. P | 0.840710 |
| Location | 5,308,541 – 5,308,656 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.70 |
| Mean single sequence MFE | -26.88 |
| Consensus MFE | -8.38 |
| Energy contribution | -8.54 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.840710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5308541 115 + 22224390 ACUGCAGUAAUUUGGGCUGUUCAUUUACAUGGCCCGAUAUAAAUACGC-AAAUUCACUGAGAGCAAUUGCCCCAAAGUGUUCAAUGUUAAUAUAUAAAUUA----UAUGUAGAUUUGUUG .(((((((((((((((((((........))))))).(((((...(((.-.....((((..(.((....)).)...)))).....)))...)))))))))))----).)))))........ ( -24.80) >DroSec_CAF1 45284 111 + 1 ACUGCAGUAAUUUGGGCUGUUAAUUUACAUGCCCUGA----AAUGCGC-AAAUACACUGAGAGCAAUUGCCGCAAGGUGUUCAAUGUUUGCAUAUAAAUUA----CAUGUAAAUUAGCUG ..((((((((((((((((((......))).))))...----.....((-(((((......((((....(((....)))))))..)))))))....))))))----).))))......... ( -30.10) >DroSim_CAF1 36800 111 + 1 ACUGCAGUAAUUUGGGCUGUUAAUUUACAUGCCCUGA----AAUGCGC-AAAUACACUGAGAGCAAUUGCCGCAAGGUGUUCAAUGUUUGCAUAUAAAUUA----CAUGUAGAUUAGCUG .(((((((((((((((((((......))).))))...----.....((-(((((......((((....(((....)))))))..)))))))....))))))----).)))))........ ( -33.40) >DroEre_CAF1 48018 98 + 1 ACUGCAGUAAUUUGGGCUGUUAAUUUACAUACCCUGA----AAAAGGCCGGAUACACUGAGAGCAAUUGCAGUGACUAGCGCCAGGUU---------AUUA----CAUUUACA-----CG ..((.((((((((((((((.............(((..----...))).......(((((..(....)..)))))..)))).)))))))---------))).----))......-----.. ( -24.20) >DroYak_CAF1 47789 95 + 1 ACUGCAGUAAUUUGGGCUGUUCAUUUACAUCCCCUGA----ACUACGC-AGCUACACUGAGCGUAAUUGCAGUGAAUGGU------UU---------AAUAAAUUCAUUUUAA-----UA ((((((((.....(((.(((......))).)))....----..(((((-...........)))))))))))))((((((.------..---------.......))))))...-----.. ( -21.90) >consensus ACUGCAGUAAUUUGGGCUGUUAAUUUACAUGCCCUGA____AAUACGC_AAAUACACUGAGAGCAAUUGCCGCAAAGUGUUCAAUGUU___AUAUAAAUUA____CAUGUAAAUU_G_UG ..(((.((((((.(((((((......))).))))............((..............)))))))).))).............................................. ( -8.38 = -8.54 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:13 2006