Locus 1933

Sequence ID X_DroMel_CAF1
Location 5,307,527 – 5,307,645
Length 118
Max. P 0.999175
window3142

overview

Window 2

Location 5,307,527 – 5,307,645
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.21
Mean single sequence MFE -41.46
Consensus MFE -35.10
Energy contribution -35.94
Covariance contribution 0.84
Combinations/Pair 1.08
Mean z-score -3.01
Structure conservation index 0.85
SVM decision value 3.41
SVM RNA-class probability 0.999175
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5307527 118 + 22224390
GUGGUAACGAUGCCAACA--AAAAUGUUGGACAUUGGUCGAGACGGCGUCGUGACCUUCGCAGCGCCUUUUUUUGUCGACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA
.((((((((.(((((...--....(((((.(((((((((((((.(((((.(((.....))).))))).)).....))))))....))))).)))))......)))))..))))))))... ( -42.92)
>DroSec_CAF1 44307 116 + 1
GUGGUAACGAUGCCAACA--AAAAUGUUGGACAUUGGUCGAGACGGCGUCGUGACCUUCGCAGCGCCUUUUUU--UCGACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA
.((((((((.(((((...--....(((((.(((((((((((((.(((((.(((.....))).)))))....))--))))))....))))).)))))......)))))..))))))))... ( -45.62)
>DroSim_CAF1 35837 116 + 1
GUGGUAACGAUGCCAACA--AAAAUGUUGGACAUUGGUCGAGACGGCGUCGUGACCUUCGCAGCGCCUUUUUU--UCGACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA
.((((((((.(((((...--....(((((.(((((((((((((.(((((.(((.....))).)))))....))--))))))....))))).)))))......)))))..))))))))... ( -45.62)
>DroEre_CAF1 47075 114 + 1
GUGGCAACGAUGCCAGCG--AAAAUGUUGGACAAUGGACGAGACGGCGCCGUGACCUUCGCAGCGCCUUUUUU---C-ACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA
.((((((((.(((((.(.--....(((((.......((.((((.(((((.(((.....))).))))))))).)---)-((........)).))))).....))))))..))))))))... ( -39.30)
>DroYak_CAF1 46774 117 + 1
GUGGUAACGAUGCCAACAACAAAAUGUUGGACAAUGGACGAGACGGCGCCGUGACCUUUGCAGCGCCUUUUUU---CGACUUUAAAACGUACAGCAAACAAGUGGAAAGUGUUGCCGAGA
.(((((((..((((((((......)))))).)).....(((((.(((((.(..(...)..).)))))...)))---))(((((...((.............))..))))))))))))... ( -33.82)
>consensus
GUGGUAACGAUGCCAACA__AAAAUGUUGGACAUUGGUCGAGACGGCGUCGUGACCUUCGCAGCGCCUUUUUU__UCGACUUUAAAAUGUACAGCAAACAAGUGGCAAGUGUUGCCGAGA
.((((((((.(((((.........(((((.(((((((((((((.(((((.(((.....))).))))).))).....)))))....))))).)))))......)))))..))))))))... (-35.10 = -35.94 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:11 2006