Locus 1930

Sequence ID X_DroMel_CAF1
Location 5,305,091 – 5,305,211
Length 120
Max. P 0.782674
window3138

overview

Window 8

Location 5,305,091 – 5,305,211
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.28
Mean single sequence MFE -37.66
Consensus MFE -29.46
Energy contribution -29.50
Covariance contribution 0.04
Combinations/Pair 1.09
Mean z-score -1.77
Structure conservation index 0.78
SVM decision value 0.56
SVM RNA-class probability 0.782674
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5305091 120 - 22224390
GCAUUUGCUGGGCGACUUUCAUUGGGAUAAACUAUUCCUUCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCAAGAGUGGAAUGUCCGAAGACGUUGCCUGAUUUCUCUAA
....((((((((((....((((.((((........))))..))))...(((......))))).))))))))..(((((((((.....((((((((....)))))).)))))))).))).. ( -32.60)
>DroSec_CAF1 41794 119 - 1
GCAUUCGCUGGGCGACUUUGAUGGGGA-AAACUAUUCCUCCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCAAGAGUGGAAUGUCCGAAGACGUUCCCUGAUUUCGCUAA
((....((((((((......(((((((-(.....)))).)))).....(((......))))).)))))).....((((.(((...(.((((((((....))))))))))))))))))... ( -38.70)
>DroSim_CAF1 32591 119 - 1
GCAUUCGCUGGGCGACUUUGAUGGGGA-AAACUAUUUCUCCAUGGCUCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCAAGAGUGGAAUGUCCGAAGACGUUCCCUGAUUUCGCUAA
((....((((((((......(((((((-((....))))))))).....(((......))))).)))))).....((((.(((...(.((((((((....))))))))))))))))))... ( -40.40)
>DroEre_CAF1 43138 116 - 1
GCAUUUGUGGGGCGACUUUCAUGGGGA-GAACUAUU---CCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCGAGAGUGGAAUGUCCGAAGACGUUCCUUGAUUUCGCUAA
..........((((((((((((((((.-...(....---....).))).)))...(((((((...)))))))..)))))))((((..((((((((....))))))))....))))))).. ( -37.90)
>DroYak_CAF1 43915 116 - 1
GCACUUGCUGGGCGACUUUCAUGGGGA-AAACUAUG---CCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCGAGAGUGGAAUGUCCGGAGACGUUCCUUGAUUUCGCUAA
((....))..((((((((((((((((.-...(....---....).))).)))...(((((((...)))))))..)))))))((((..((((((((....))))))))....))))))).. ( -38.70)
>consensus
GCAUUUGCUGGGCGACUUUCAUGGGGA_AAACUAUU_CUCCAUGGCCCGCAUUUAAUUGCUGUCCCAGCAAUCAGAAAGUCAAGAGUGGAAUGUCCGAAGACGUUCCCUGAUUUCGCUAA
((....((((((((.........(((.....((((......)))))))(((......))))).)))))).....((((.(((.....((((((((....)))))))).)))))))))... (-29.46 = -29.50 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:07 2006