Locus 1925

Sequence ID X_DroMel_CAF1
Location 5,301,138 – 5,301,229
Length 91
Max. P 0.648238
window3128

overview

Window 8

Location 5,301,138 – 5,301,229
Length 91
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 91.18
Mean single sequence MFE -25.15
Consensus MFE -21.07
Energy contribution -21.26
Covariance contribution 0.19
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.84
SVM decision value 0.24
SVM RNA-class probability 0.648238
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5301138 91 - 22224390
UUCCCGAGCUCAUCUGGCGGCGAACUGUGAUUGUUGUCCCU-C-CAGUCAAAUC-----AAAUCCCUCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA
.....((((((..(((.(((((....(.((((.(((.(...-.-..).)))...-----.)))).)..))))).)))(((....)))))))))..... ( -23.60)
>DroSec_CAF1 37971 91 - 1
UUCCCGAGCUCAUCUGGCGGCGAACUGUGAUUGUUGUCCCU-C-CAGCAAAAUC-----AAAUCCCCCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA
.....((((((..(((.(((((.....(((((((((.....-.-)))))..)))-----)........))))).)))(((....)))))))))..... ( -26.02)
>DroSim_CAF1 28799 91 - 1
UUCUCGAGCUCAUCUGGCGGCGAACUGUGAUUGUUGUCCCU-C-CAGCAAAAUC-----AAAUCCCCCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA
.....((((((..(((.(((((.....(((((((((.....-.-)))))..)))-----)........))))).)))(((....)))))))))..... ( -26.02)
>DroEre_CAF1 39359 97 - 1
UUCCGGAUCUCAUCUGGCGGCGAACUGUGAUUGCUGUCCC-CCACAGGAAAAUCGUACAAAAUCCACCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA
..((((((...))))))....(((((.(((((((((((..-.....(((.............))).......))))))))))....).)))))..... ( -24.96)
>consensus
UUCCCGAGCUCAUCUGGCGGCGAACUGUGAUUGUUGUCCCU_C_CAGCAAAAUC_____AAAUCCCCCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA
.....((((((.....((((....))))(((((((((.......((((.....................))))))))))))).....))))))..... (-21.07 = -21.26 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:59 2006