Locus 1922

Sequence ID X_DroMel_CAF1
Location 5,296,579 – 5,296,693
Length 114
Max. P 0.850761
window3125

overview

Window 5

Location 5,296,579 – 5,296,693
Length 114
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 82.24
Mean single sequence MFE -17.38
Consensus MFE -11.41
Energy contribution -11.97
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.08
Structure conservation index 0.66
SVM decision value 0.79
SVM RNA-class probability 0.850761
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5296579 114 + 22224390
UAUACAUAUGAAAAUGUAUGAUUCUUGGCGCAUAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUUAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA
(((((((......))))))).......((((((...............((((((.....))))))...........(((((((((........)).)))))))..))))))... ( -21.40)
>DroSec_CAF1 33616 102 + 1
AAUACAUAAACAUACGUA------------CAUAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUAAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA
...............(((------------(((...............((((((.....))))))............(((.((((........)))).)))....))))))... ( -15.30)
>DroSim_CAF1 24440 102 + 1
AAUACAUAAACAUACGUA------------CAUAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUUAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA
...............(((------------(((...............((((((.....))))))...........(((((((((........)).)))))))..))))))... ( -15.90)
>DroEre_CAF1 34964 95 + 1
-------------------GAUUCUUGGCGCACAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUUAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA
-------------------..........(((((..............((((((.....))))))...........(((((((((........)).)))))))...)))))... ( -16.90)
>consensus
AAUACAUAAACAUACGUA____________CAUAAAUAACCAUAUUACGCAUACGCAAUGUGUGCAUGACGAACAAAUUAAUUGAAUCAACAAUCGAAUUAAUCAAUGUGCAAA
.............................(((((..............((((((.....))))))...........(((((((((........)).)))))))...)))))... (-11.41 = -11.97 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:56 2006