Locus 1921

Sequence ID X_DroMel_CAF1
Location 5,296,218 – 5,296,330
Length 112
Max. P 0.507393
window3124

overview

Window 4

Location 5,296,218 – 5,296,330
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.98
Mean single sequence MFE -26.88
Consensus MFE -14.10
Energy contribution -14.94
Covariance contribution 0.84
Combinations/Pair 1.12
Mean z-score -2.13
Structure conservation index 0.52
SVM decision value -0.05
SVM RNA-class probability 0.507393
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5296218 112 - 22224390
AAAUCUGAAGGCGUGUGUCAUAUGCCUGCAUAAAUCUGAAUGCAUUUACC-UAAAAUUCUACUUACUGCAUAUAUUAUGU-------AUUCGUAGUUACACAUGCAUGCACUCGUUAAUU
.....((...((((((((..((((..(((((((...((.(((((......-...............))))).))))))))-------)..))))...))))))))...)).......... ( -22.80)
>DroSec_CAF1 33272 107 - 1
AAAUCUGAAGGCGUGUGUCAUAUGCCUGCAUAAAUCUGAAUGCAUUUACC-UGAGAUUCUACUUA-----UGUAUUAUGU-------AAUCGUAGUCACACAUGCCUGCACUCGUUAAUU
.....((.((((((((((..((((....)))).....((.(((((.(((.-((((......))))-----.)))..))))-------).))......)))))))))).)).......... ( -27.40)
>DroSim_CAF1 24097 106 - 1
AAAUCUGAAGGCGUGUGUCAUAUGCCUGCAUAAAUCUGAAUGCAUUUACC-UGAGAUUCUACUUA-----UGUAUUAUGU-------AAUCCUCCU-AGACAUGCCUGCACUCGUUAAUU
.....((.((((((((....((((....)))).....((.(((((.(((.-((((......))))-----.)))..))))-------).)).....-..)))))))).)).......... ( -22.90)
>DroEre_CAF1 34625 107 - 1
UAAUCUGAAGGUGUGUGUAAUAUGCGUGCAUAAAUCUCAAUGCAAUUUCC-UGGGAUUCUGCAUA-----UGUAUUAUGU-------AUUCGUACUUGCACAUGGCUGCACUCAUUAAUU
.....((.((.(((((((((((((.((((((((....(((((((...((.-...))...))))).-----))..))))))-------)).)))).))))))))).)).)).......... ( -28.60)
>DroYak_CAF1 34779 114 - 1
-AAUCUGAAGGCGUGUGUAAUAUGCGUGCAUAAAUCACAAUGCAAUGGCAUUGAGAUGCUGCAAA-----UGUAUUAUGUAUUAUGGAUUCGUAGUUACACAUGGCUGCACUCGUUAAUU
-....((.((.((((((((((.((((((((...(((.((((((....)))))).)))..))))((-----(.(((........))).))))))))))))))))).)).)).......... ( -32.70)
>consensus
AAAUCUGAAGGCGUGUGUCAUAUGCCUGCAUAAAUCUGAAUGCAUUUACC_UGAGAUUCUACUUA_____UGUAUUAUGU_______AUUCGUAGUUACACAUGCCUGCACUCGUUAAUU
.....((.((((((((((..((((..(((((........)))))...............(((.........)))................))))...)))))))))).)).......... (-14.10 = -14.94 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:55 2006