Locus 1915

Sequence ID X_DroMel_CAF1
Location 5,290,102 – 5,290,213
Length 111
Max. P 0.977728
window3115

overview

Window 5

Location 5,290,102 – 5,290,213
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.86
Mean single sequence MFE -38.88
Consensus MFE -24.62
Energy contribution -26.02
Covariance contribution 1.40
Combinations/Pair 1.17
Mean z-score -2.95
Structure conservation index 0.63
SVM decision value 1.80
SVM RNA-class probability 0.977728
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5290102 111 - 22224390
AUGAAGUGCGCCCACUUCAGCAGCGAUGUUUCUUUAUAAUCAAAUUGGAAACUGUAGCG-UUUUGUCCUGGAUCCU-AGGGAUAAAGCCAC-------CAAGGAUAUCGGGCGACUUCGA
.((((((.(((((......((.(((..((((((.............))))))))).))(-(((((((((.......-.))))))))))...-------..........))))))))))). ( -36.72)
>DroSec_CAF1 27440 112 - 1
AUGAAGUGCGCCCACUUCA---GCGAUGUUUCUUUAUAAUCAAAUUGGAAACUGUAGCG-UUUUGUCC-GAGUCAU-GGAGGCGAAGCCAC-CGCCC-CAAGGAUAUCGGGCGACUUCAA
.((((((.(((((......---((...((((((.............))))))....)).-...(((((-......(-((.((((.......-)))))-)).)))))..))))))))))). ( -39.32)
>DroSim_CAF1 18260 112 - 1
AUGAAGUGCGCCCACUUCA---GCGAUGUUUCUUUAUAAUCAAAUUGGAAACUGUAGCG-UUUUGUCC-GAGUCCU-GGAGGCGAAGCCAC-CGCCC-CAAGGAUAUCGGGCGACUUCAA
.((((((.(((((......---((...((((((.............))))))....)).-........-(((((((-((.((((.......-)))))-).))))).))))))))))))). ( -41.82)
>DroEre_CAF1 28667 114 - 1
AUGAAGUGCGCCCACUUCA---GCGAUGUUUCUUUAUAAUCAAAUUGCAAACUGUAGCGAUUUUGCCC-GAGUCUU-GGAGGCGAAGUUAC-CGCCCCACAGGACAUCGGGCAACUUACA
.(((((((....)))))))---..(((...........)))(((((((........)))))))(((((-(((((((-((.((((.......-)))).).)))))).)))))))....... ( -41.60)
>DroYak_CAF1 28487 105 - 1
AUGAAGUGCGCCCACUUCA---GCGAUGUUUCUUUAUAAUCAAAUUGGAAACAGUAGCG-UUUUGUCC-GUGUCUUUGAAGGCGUAGUUGCCCGCCCCCAAGGACAUCGA----------
.(((((((....)))))))---((..(((((((.............)))))))...)).-.....((.-(((((((((..((((........))))..))))))))).))---------- ( -34.92)
>consensus
AUGAAGUGCGCCCACUUCA___GCGAUGUUUCUUUAUAAUCAAAUUGGAAACUGUAGCG_UUUUGUCC_GAGUCCU_GGAGGCGAAGCCAC_CGCCC_CAAGGAUAUCGGGCGACUUCAA
.(((((((....)))))))...((...((((((.............))))))....))....((((((...(((((....((((........))))....)))))...))))))...... (-24.62 = -26.02 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:47 2006