Locus 1913

Sequence ID X_DroMel_CAF1
Location 5,288,491 – 5,288,592
Length 101
Max. P 0.660839
window3111

overview

Window 1

Location 5,288,491 – 5,288,592
Length 101
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 82.54
Mean single sequence MFE -38.83
Consensus MFE -21.62
Energy contribution -22.88
Covariance contribution 1.25
Combinations/Pair 1.11
Mean z-score -2.32
Structure conservation index 0.56
SVM decision value 0.27
SVM RNA-class probability 0.660839
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5288491 101 + 22224390
UGGUAAUCAUGAUUUAAGCGCUAAUCUGUCCCUGUGCG-------------------CGCACAUAGGGGCGAAUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACACGUCAGGAA
......((.((((...(((.(((.((.(((((((((..-------------------....))))))))))).))).)))..(((....)))..(((((......)))))..)))).)). ( -34.80)
>DroSec_CAF1 25750 118 + 1
UGGUAAUCAUGAUUUAAGCGCUAAUCUGUCCCUGUGCGCAGCCACGCCCACCC-UGGCGCGCAUGGAGGCG-AUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACACGUCAGCCA
.(((.....((((...(((.(((.((.(((.((((((((.((((.(.....).-)))))))))))).))))-)))).)))..(((....)))..(((((......)))))..))))))). ( -41.10)
>DroEre_CAF1 26986 119 + 1
UGGUAAUCAUGAUUUGAGCGCUAAUCUGUCCCCAAGAGCUGACACGCCCACGGGGGGCGAGCAUGGAGGCG-AUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACUCGACAGGAA
((((..(((.....)))..)))).((((((((((...(((..(((((((.....)))))....))..))).-.)))).....(((....))).((((((......)))))).)))))).. ( -44.00)
>DroYak_CAF1 22885 116 + 1
UGGUAAUCAUGAUUUAAGCGCUAAUCUGUCCC---GAGCAGCCACGCCCACUGGCGGCGAGCAUGGCGGCG-AUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACGCGACAGGAA
.................((((.......((((---(.((.(((((((((....).))))....)))).)).-.)))))....(((....)))..(((((......)))))))).)..... ( -35.40)
>consensus
UGGUAAUCAUGAUUUAAGCGCUAAUCUGUCCCUGUGAGCAGCCACGCCCAC_G__GGCGAGCAUGGAGGCG_AUGGGGUUAACCGGAAACGGAAGUGAAAAUAAAUUCACACGACAGGAA
................(((.(((...((((.(((((........((((.......))))..))))).))))..))).)))..(((....)))..(((((......))))).......... (-21.62 = -22.88 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:43 2006