| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,286,955 – 5,287,053 |
| Length | 98 |
| Max. P | 0.899483 |
| Location | 5,286,955 – 5,287,053 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 77.70 |
| Mean single sequence MFE | -35.27 |
| Consensus MFE | -23.09 |
| Energy contribution | -22.65 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5286955 98 - 22224390 -CCGUUGCGCAUGGCAACAUGCAGCAAAAAGCGUCUGACAGACAGUCAGACCAACUGACAGAUGGUCCGGAGAUGGCGGUGGGCGGUGGGCGGUGGGCA -...(((((((((....))))).))))...(((((((((.....)))))))..((((.(..((.(((((..(....)..))))).))..)))))..)). ( -38.20) >DroSec_CAF1 23792 89 - 1 -CCGUUACGCAUGGCAACAUGCAGCAAAAAGCGUCUGACAGACAGGCAGACCAACUGACAGAUGGCCUGGAAUAGGAGGUGGGCG---------GGACA -(((((..(((((....))))).........((((((.(((...((....))..))).))))))((((........)))).))))---------).... ( -30.00) >DroYak_CAF1 20636 86 - 1 GCCGUCGCGCAUGGCAACGUGCAGCAAAAAGCGCCUGACACACA----GGCCAACUGACAGAUGGCCCGGGGGCGGUAGUGGGCG---------UGGCA ((((.((((((((....)))))..((....((.((((.......----(((((.(.....).))))))))).)).....)).)))---------)))). ( -37.61) >consensus _CCGUUGCGCAUGGCAACAUGCAGCAAAAAGCGUCUGACAGACAG_CAGACCAACUGACAGAUGGCCCGGAGAAGGAGGUGGGCG_________GGGCA ...(((..(((((....))))).........((((((.(((.............))).))))))(((((..........)))))...........))). (-23.09 = -22.65 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:42 2006